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OR208547.1__WNA14226.1__phi182_58__00058

Bact-Vir

OR208547.1__WNA14226.1__phi182_58__00058

Identity

Accession:
OR208547 ↗
Kingdom:
phage

Quality

89.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-88
PDB
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 47.0 5.34e-01 74.4% 93.8%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.68 39.0 4.85e-01 72.1% 100.0%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 48.0 5.01e-01 76.7% 79.7%
3a2yA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.66 60.0 4.65e-01 100.0% 71.9%
4ry2A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.66 59.0 5.03e-01 100.0% 83.7%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.66 59.0 4.45e-01 100.0% 62.1%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.64 43.0 4.20e-01 70.9% 64.3%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 46.0 5.07e-01 77.9% 94.3%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.63 56.0 4.89e-01 100.0% 92.4%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 48.0 5.27e-01 82.6% 100.0%
2gs5A01 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.62 49.0 3.78e-01 84.9% 82.4%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.62 38.0 4.22e-01 100.0% 80.3%
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 46.0 4.76e-01 80.2% 86.4%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 46.0 4.93e-01 100.0% 94.5%
2k1gA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.60 55.0 4.75e-01 100.0% 70.5%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 42.0 4.52e-01 95.3% 98.6%
1vlaA01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.55 23.0 3.02e-01 88.4% 66.7%
1ml8A01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.54 23.0 3.13e-01 90.7% 82.4%
6iikB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 46.0 3.16e-01 100.0% 94.6%
1whzA00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.53 35.0 3.81e-01 77.9% 84.1%
2in5A00 2.40.360.10 Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like 0.51 45.0 3.50e-01 100.0% 93.3%
2qc5A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 41.0 2.89e-01 89.5% 33.2%
6e20A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 39.0 3.47e-01 86.0% 100.0%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4191690 4.1.1.98 beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.72 47.0 5.53e-01 87.2% 100.0%
4157193 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 50.0 5.37e-01 73.3% 98.6%
4083915 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 49.0 5.22e-01 73.3% 97.3%
4226849 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 48.0 4.99e-01 72.1% 83.7%
4321173 4.1.1.98 beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.69 45.0 5.27e-01 84.9% 100.0%
3230113 4.1.1.315 beta barrels › SH3 › SH3 › SH3 › SH3_12, XRN1_D1 0.69 58.0 3.72e-01 91.9% 44.6%
3486495 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 46.0 3.62e-01 73.3% 34.3%
3839016 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 46.0 5.13e-01 72.1% 98.5%
4432457 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 46.0 4.97e-01 72.1% 95.7%
3577864 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.66 42.0 4.31e-01 79.1% 65.9%
3702189 219.1.1.28 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.66 59.0 4.45e-01 100.0% 67.6%
5056599 219.1.1.51 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 0.66 59.0 4.91e-01 100.0% 88.7%
4251253 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.66 46.0 4.29e-01 72.1% 64.8%
3276044 4.1.1.315 beta barrels › SH3 › SH3 › SH3 › SH3_12, XRN1_D1 0.66 56.0 3.64e-01 93.0% 43.3%
2570822 219.1.1.18 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.66 59.0 4.95e-01 100.0% 81.4%
3587555 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 47.0 5.14e-01 75.6% 95.7%
4668815 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.65 45.0 4.40e-01 72.1% 68.4%
4253108 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.65 45.0 4.52e-01 72.1% 72.7%
5046193 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.65 45.0 4.47e-01 72.1% 71.1%
3970579 219.1.1.18 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.65 58.0 4.83e-01 100.0% 82.7%
4679625 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 43.0 4.97e-01 79.1% 98.3%
3300848 4.1.1.38 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.65 37.0 3.50e-01 80.2% 46.6%
4885908 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.64 44.0 4.25e-01 70.9% 68.4%
4172306 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.64 47.0 4.56e-01 89.5% 69.5%
3712782 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 43.0 4.45e-01 72.1% 73.8%
4093911 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 48.0 5.04e-01 81.4% 92.0%
3775592 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.63 41.0 2.22e-01 79.1% 3.6%
4620685 4113.1.1.1 beta barrels › VC0467-like › VC0467-like › VC0467-like › DUF179 0.63 50.0 3.90e-01 84.9% 82.2%
4459365 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 47.0 4.86e-01 81.4% 93.8%
5005903 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.62 45.0 4.29e-01 82.6% 66.0%
4046385 219.1.1.18 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.61 55.0 4.68e-01 100.0% 84.3%
1746358 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 49.0 4.53e-01 86.0% 82.4%
4252954 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 44.0 4.77e-01 81.4% 95.7%
2700914 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.60 43.0 4.49e-01 89.5% 80.0%
4248855 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 45.0 4.73e-01 82.6% 94.6%
4947695 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 48.0 5.04e-01 87.2% 100.0%
5037772 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.59 44.0 4.08e-01 82.6% 61.9%
3585492 4.1.1.103 beta barrels › SH3 › SH3 › SH3 › SH3_12 0.58 53.0 4.85e-01 98.8% 78.2%
5068429 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.57 44.0 4.15e-01 88.4% 67.3%
3476178 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 48.0 4.33e-01 93.0% 89.2%
3518287 4.1.1.347 beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.56 48.0 4.36e-01 94.2% 97.4%
677 4113.1.1.1 beta barrels › VC0467-like › VC0467-like › VC0467-like › DUF179 0.56 45.0 3.52e-01 88.4% 81.3%
3342793 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.53 48.0 3.72e-01 100.0% 73.7%
3938291 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.51 45.0 3.92e-01 98.8% 65.2%
3193814 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.51 45.0 4.06e-01 98.8% 77.5%
2426533 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.51 45.0 3.78e-01 98.8% 64.1%
3625177 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.51 45.0 3.88e-01 98.8% 65.2%
3696189 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.51 45.0 3.59e-01 98.8% 59.0%
4025002 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.50 45.0 3.93e-01 100.0% 70.0%
3741907 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.50 45.0 3.84e-01 100.0% 64.3%
3235628 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.50 44.0 3.89e-01 100.0% 69.2%
D2 high residues 129-167
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 58.0 5.02e-01 94.9% 65.2%
2m5sA00 2.40.30.240 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.70 61.0 4.25e-01 100.0% 36.3%
1ng2A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 50.0 4.91e-01 87.2% 90.9%
2gs5A01 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.64 52.0 3.42e-01 100.0% 20.2%
4cc2A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 46.0 4.15e-01 84.6% 68.3%
1ep3B01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.64 53.0 4.06e-01 100.0% 41.4%
5b7gA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.58 48.0 3.01e-01 100.0% 59.8%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3629145 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.78 62.0 5.33e-01 92.3% 64.6%
3893816 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.73 57.0 5.58e-01 92.3% 93.3%
5010031 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.69 60.0 4.28e-01 100.0% 38.3%
5039120 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 54.0 5.29e-01 97.4% 86.7%
3480213 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.66 50.0 4.64e-01 89.7% 78.2%
3946832 236.1.1.9 beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain › ADH_zinc_N 0.64 48.0 3.05e-01 97.4% 18.9%
4286581 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.58 48.0 4.50e-01 100.0% 76.0%
4470780 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.57 45.0 3.28e-01 94.9% 30.0%
4219259 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.57 46.0 4.20e-01 100.0% 67.3%
4676064 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.56 47.0 4.27e-01 100.0% 72.7%
4412296 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.56 44.0 4.44e-01 100.0% 92.5%
3556566 3613.1.1.1 beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Clp1 0.56 45.0 3.32e-01 100.0% 39.2%
4463610 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.55 43.0 4.39e-01 94.9% 94.7%
4583854 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.54 45.0 4.26e-01 100.0% 76.0%
3188814 3687.1.1.0 alpha bundles › NADPH-cytochrome p450 reductase helical insertion domain › NADPH-cytochrome p450 reductase helical insertion domain › NADPH-cytochrome p450 reductase helical insertion domain 0.54 42.0 3.15e-01 94.9% 89.2%
4173697 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.54 45.0 4.05e-01 100.0% 70.0%
4210485 4.1.1.303 beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.54 41.0 3.73e-01 100.0% 61.5%
4358094 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.54 43.0 4.00e-01 100.0% 69.1%
4448334 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.53 44.0 3.84e-01 100.0% 81.5%
4072610 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.52 40.0 3.54e-01 89.7% 56.7%
4986769 275.1.1.2 a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA_N 0.50 37.0 3.48e-01 97.4% 76.7%