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OR211677.1__WKC57581.1__EPA3_164__00164

Bact-Vir

OR211677.1__WKC57581.1__EPA3_164__00164

Identity

Accession:
OR211677 ↗
Kingdom:
phage

Quality

81.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vandenendeviridae› Pakpunavirus› Pseudomonas_phage_vB_PaM_EPA3

TaxID: 3058969

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-57
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.65 55.0 3.96e-01 100.0% 51.4%
1xhnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 49.0 3.55e-01 86.8% 39.8%
1upqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 46.0 3.75e-01 79.2% 80.4%
2arzA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 47.0 3.56e-01 90.6% 42.7%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 45.0 3.69e-01 84.9% 83.5%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 52.0 4.39e-01 100.0% 77.2%
5dm6100 2.20.28.120 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › Ribosomal protein L33 0.60 41.0 4.15e-01 73.6% 90.7%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 49.0 4.16e-01 100.0% 99.0%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 47.0 3.95e-01 100.0% 100.0%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.58 48.0 4.03e-01 100.0% 94.1%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.58 48.0 4.15e-01 100.0% 65.9%
1z87A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 43.0 3.56e-01 83.0% 80.0%
4kkdB04 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 40.0 3.20e-01 79.2% 49.2%
1zvfB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 45.0 3.29e-01 92.5% 48.8%
1whlA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.56 47.0 4.01e-01 100.0% 94.7%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.55 41.0 3.89e-01 86.8% 100.0%
2vpaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 42.0 2.96e-01 90.6% 32.4%
1n26A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 43.0 3.99e-01 96.2% 67.9%
2v3sA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 38.0 3.28e-01 79.2% 100.0%
3ihpA03 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 45.0 2.83e-01 100.0% 30.1%
1zldA00 2.60.40.1920 Mainly Beta › Sandwich › Immunoglobulin-like › Proteinaceous host-selective toxin ToxA 0.53 43.0 3.63e-01 100.0% 92.2%
1wgpA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 43.0 3.47e-01 100.0% 61.2%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.53 37.0 3.08e-01 81.1% 76.9%
4fcaA01 2.60.120.1250 Mainly Beta › Sandwich › Jelly Rolls › Peptidase M60, enhancin-like domain 1 0.53 44.0 3.62e-01 100.0% 92.7%
3b2dC00 2.60.40.770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 42.0 3.24e-01 94.3% 74.1%
2zewB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 43.0 3.29e-01 100.0% 95.9%
3g7dA03 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 43.0 3.41e-01 100.0% 71.0%
1lr5B00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 42.0 3.16e-01 100.0% 35.8%
1o59A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 40.0 3.02e-01 100.0% 85.9%
3npfA03 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.52 43.0 3.16e-01 100.0% 44.7%
4hscX04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.51 41.0 3.39e-01 96.2% 58.2%
6iikB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 40.0 2.61e-01 100.0% 36.8%
1wzlA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 37.0 3.08e-01 90.6% 67.8%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3587259 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.70 57.0 4.93e-01 96.2% 81.1%
4400596 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.68 56.0 4.06e-01 96.2% 47.5%
3255397 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 56.0 4.11e-01 98.1% 58.1%
3185321 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.66 52.0 4.78e-01 92.5% 92.0%
2755606 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.64 52.0 3.52e-01 96.2% 32.2%
3744112 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.64 53.0 4.35e-01 100.0% 89.1%
3801890 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.64 50.0 3.44e-01 90.6% 32.0%
3056322 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.62 51.0 4.21e-01 100.0% 92.7%
3998029 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 47.0 3.83e-01 84.9% 72.4%
3511457 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 46.0 3.49e-01 83.0% 77.8%
4599023 5.1.3.136 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DPPIV_N, PD40 0.60 43.0 2.78e-01 81.1% 92.1%
4518867 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.59 47.0 4.10e-01 96.2% 96.8%
4487049 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.59 52.0 3.63e-01 100.0% 56.6%
3253075 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.59 42.0 3.38e-01 79.2% 69.2%
3900957 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 45.0 3.54e-01 88.7% 67.7%
3453549 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 48.0 3.93e-01 100.0% 87.8%
3706884 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 40.0 3.29e-01 79.2% 74.5%
3615787 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.55 44.0 3.08e-01 100.0% 74.2%
4099186 219.1.1.21 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C58 0.55 45.0 3.26e-01 100.0% 48.9%
3923043 4326.1.1.1 ↗ a+b two layers › ERH-like › ERH-like › ERH-like › ER 0.55 38.0 3.21e-01 75.5% 73.0%
3297442 10.12.1.17 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy,DIOX_N 0.55 44.0 2.96e-01 100.0% 26.5%
4121830 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.54 46.0 3.83e-01 100.0% 93.0%
3248219 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 42.0 3.53e-01 98.1% 83.6%
5051220 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 42.0 3.76e-01 100.0% 91.1%
3406524 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.53 38.0 3.35e-01 77.4% 60.2%
3576330 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 42.0 3.30e-01 100.0% 59.3%
3934469 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 41.0 3.23e-01 92.5% 68.8%
3386643 1.1.7.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Lum_binding 0.51 43.0 3.53e-01 100.0% 77.1%
4388794 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.51 41.0 3.27e-01 100.0% 75.4%
3224347 10.7.1.0 ↗ beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.51 43.0 3.52e-01 100.0% 70.0%
4944071 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 40.0 3.31e-01 96.2% 79.1%
3257464 11.1.1.698 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TgrO1 0.51 41.0 3.43e-01 94.3% 90.0%
3497728 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.50 37.0 3.05e-01 88.7% 61.6%
5043146 3386.1.1.0 ↗ beta sandwiches › gp9 C-terminal domain-like › gp9 C-terminal domain-related › gp9 C-terminal domain-related 0.50 40.0 3.51e-01 100.0% 94.7%
4021313 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.50 41.0 3.05e-01 100.0% 34.1%
5008468 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.50 43.0 3.14e-01 100.0% 88.1%
3586087 11.1.4.111 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › fn3 0.50 41.0 3.41e-01 94.3% 73.0%