Back to structures

OR225223.1__WLJ71101.1__X__00005

Bact-Vir

OR225223.1__WLJ71101.1__X__00005

Identity

Accession:
OR225223 ↗
Kingdom:
phage

Quality

74.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-82
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.68 60.0 5.35e-01 100.0% 97.2%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 40.0 4.23e-01 71.2% 68.3%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 39.0 4.13e-01 71.2% 65.2%
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.65 42.0 4.38e-01 97.3% 70.6%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.64 46.0 4.71e-01 82.2% 80.3%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.63 45.0 3.84e-01 76.7% 45.6%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.63 44.0 4.35e-01 74.0% 78.5%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.63 45.0 4.05e-01 75.3% 74.5%
2kx2A00 3.30.780.30 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › 0.63 48.0 4.43e-01 84.9% 94.8%
4l8hB00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.62 50.0 4.25e-01 89.0% 93.5%
1ah5A03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.62 44.0 4.19e-01 75.3% 70.9%
1e5pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 43.0 3.38e-01 72.6% 48.3%
1f21A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.60 43.0 3.48e-01 82.2% 36.8%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 43.0 4.36e-01 78.1% 91.9%
3mcaB01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.60 35.0 3.23e-01 71.2% 43.8%
2ap1A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 41.0 3.36e-01 82.2% 38.1%
2nugB02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 41.0 4.20e-01 79.5% 76.1%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.58 40.0 3.15e-01 100.0% 33.8%
1c9rA04 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.58 43.0 3.88e-01 82.2% 56.1%
1kyfA01 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.57 43.0 3.58e-01 82.2% 67.9%
2l9pA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 42.0 3.30e-01 82.2% 95.1%
2daxA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.55 45.0 3.67e-01 90.4% 83.0%
1pfsA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 45.0 4.43e-01 95.9% 84.6%
1fp5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 40.0 3.71e-01 80.8% 88.0%
2ebkA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.55 44.0 3.78e-01 93.2% 53.1%
2mklC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 41.0 3.69e-01 82.2% 83.8%
7pkwA01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 35.0 3.22e-01 100.0% 47.6%
3f02B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.54 38.0 3.45e-01 74.0% 72.0%
3ke7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 37.0 3.07e-01 100.0% 39.8%
2m89A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 38.0 3.14e-01 75.3% 97.0%
7vd7A01 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.53 34.0 3.19e-01 100.0% 51.1%
1m4jA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.53 36.0 3.05e-01 71.2% 69.2%
2g16B00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.53 42.0 3.35e-01 90.4% 45.4%
1sezA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 41.0 3.12e-01 84.9% 98.3%
4frwA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 38.0 3.60e-01 80.8% 81.2%
5lf5A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 40.0 3.72e-01 84.9% 88.2%
3u3gA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 45.0 3.70e-01 100.0% 91.4%
4e19A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 45.0 3.78e-01 100.0% 93.2%
4of8A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.46e-01 80.8% 84.5%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.51 41.0 3.68e-01 86.3% 72.8%
8b4hA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 43.0 3.47e-01 100.0% 88.3%
2qkdA03 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.51 33.0 3.76e-01 100.0% 94.1%
3pv7A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 38.0 3.50e-01 80.8% 86.2%
2hqlA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 45.0 4.18e-01 100.0% 85.7%
3t91B00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.50 39.0 2.84e-01 86.3% 54.8%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.50 35.0 2.70e-01 100.0% 31.9%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3738775 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.69 61.0 5.03e-01 100.0% 81.5%
3404964 221.13.1.0 a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain 0.68 51.0 4.44e-01 80.8% 53.9%
3941314 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.67 49.0 4.24e-01 79.5% 54.2%
3414096 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.66 58.0 4.84e-01 100.0% 82.3%
3940020 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.66 49.0 4.08e-01 79.5% 44.6%
4194238 101.17.1.1 alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.66 42.0 4.14e-01 97.3% 60.0%
4016644 11.8.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like 0.65 49.0 3.95e-01 100.0% 40.3%
3211024 221.13.1.0 a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain 0.65 47.0 4.23e-01 78.1% 63.8%
3355790 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.64 49.0 4.02e-01 82.2% 44.8%
3924626 2484.1.1.4 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.64 47.0 4.57e-01 80.8% 69.4%
3618372 2484.1.1.99 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Peptidase_A17 0.64 48.0 4.09e-01 80.8% 58.3%
1322782 2484.5.1.1 mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RVT_connect 0.64 48.0 3.94e-01 82.2% 44.7%
4025734 2006.1.6.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.64 48.0 3.40e-01 83.6% 26.2%
3879303 330.1.1.5 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.63 49.0 4.83e-01 97.3% 77.5%
4965501 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.63 45.0 4.24e-01 75.3% 67.8%
4946320 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 54.0 4.50e-01 100.0% 59.3%
4365325 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.62 45.0 4.38e-01 79.5% 72.9%
3951937 330.8.1.1 a+b two layers › dsRBD-like › Rv2632c-like › Rv2632c-like › Rv2632c-like 0.62 48.0 4.54e-01 84.9% 75.3%
5053632 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 48.0 4.08e-01 94.5% 50.4%
None 0.61 42.0 4.07e-01 72.6% 100.0%
4609498 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.61 44.0 4.34e-01 80.8% 71.2%
3487450 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.61 48.0 3.84e-01 84.9% 51.0%
3605420 2484.1.1.26 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi 0.61 53.0 3.68e-01 98.6% 32.8%
3923456 2484.1.1.4 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.61 46.0 3.57e-01 83.6% 35.9%
3852952 330.1.1.5 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.60 46.0 4.50e-01 97.3% 76.2%
3265841 216.1.1.20 a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.60 43.0 3.90e-01 76.7% 66.0%
3555226 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.60 47.0 3.78e-01 86.3% 46.2%
3625974 284.1.3.4 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK 0.59 44.0 4.07e-01 80.8% 62.2%
3784810 216.1.1.20 a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.59 44.0 4.10e-01 82.2% 67.4%
3789856 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.59 44.0 3.89e-01 83.6% 58.3%
3825504 330.1.1.5 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.58 46.0 4.39e-01 90.4% 77.8%
4982228 2484.1.1.22 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 0.58 41.0 3.22e-01 76.7% 32.8%
4004011 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 44.0 3.95e-01 84.9% 62.7%
4116159 330.1.1.5 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.58 47.0 4.46e-01 94.5% 75.6%
3787176 4099.1.1.4 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O 0.58 45.0 3.79e-01 86.3% 84.6%
5018204 7520.1.1.0 a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like 0.57 47.0 3.66e-01 94.5% 40.6%
3827309 244.3.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.57 42.0 3.96e-01 79.5% 70.0%
5050683 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 46.0 3.98e-01 93.2% 61.6%
3854952 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.57 40.0 3.23e-01 75.3% 52.0%
3265334 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.56 42.0 3.73e-01 80.8% 65.5%
3498091 216.1.1.20 a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.56 41.0 3.48e-01 79.5% 55.4%
4218879 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.56 39.0 3.10e-01 80.8% 34.8%
4947839 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 46.0 3.94e-01 97.3% 56.0%
165196 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.55 44.0 3.78e-01 93.2% 53.1%
4599006 11.1.1.96 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.54 40.0 3.50e-01 80.8% 77.5%
3331262 216.1.1.20 a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.54 39.0 3.62e-01 76.7% 75.8%
3838020 3270.1.1.0 a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase 0.54 49.0 4.24e-01 100.0% 69.1%
4961746 304.8.1.122 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DmsR_N 0.53 37.0 3.23e-01 72.6% 50.4%
3212260 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.53 43.0 2.90e-01 90.4% 30.2%
3932096 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.53 43.0 2.94e-01 90.4% 33.9%
5029914 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.53 37.0 4.02e-01 74.0% 100.0%
3630103 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 45.0 3.81e-01 100.0% 86.9%
3614844 220.1.1.15 beta barrels › PH domain-like › PH domain-like › PH domain-like › BBL5 0.52 41.0 3.43e-01 89.0% 47.9%
3578918 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.52 36.0 2.95e-01 100.0% 38.5%
1665018 298.1.1.6 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › G6PD_C 0.52 40.0 2.77e-01 86.3% 88.9%
3586372 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.52 42.0 2.89e-01 90.4% 34.2%
2979134 167.1.1.1 alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 0.52 38.0 3.35e-01 79.5% 92.0%
3056876 167.1.1.0 alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 0.52 38.0 3.35e-01 79.5% 92.0%
3280054 331.3.1.11 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.51 42.0 3.33e-01 90.4% 66.7%
4970891 2011.2.1.7 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 0.51 37.0 2.54e-01 76.7% 83.9%
3185246 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 45.0 3.74e-01 100.0% 60.8%
3577534 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.50 42.0 2.79e-01 93.2% 31.6%
3722420 2008.1.1.143 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF7924 0.50 37.0 2.99e-01 82.2% 96.2%