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OR225224.1__WLJ71222.1__X__00040
Bact-VirOR225224.1__WLJ71222.1__X__00040
Identity
- Accession:
- OR225224 ↗
- Kingdom:
- phage
Quality
89.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-63
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5jldA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.70 | 42.0 | 2.73e-01 | 88.3% | 15.1% |
| 2gtiA01 | 3.30.160.820 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Nsp15 N-terminal domain-like | 0.64 | 44.0 | 4.36e-01 | 71.7% | 85.9% |
| 1vpkA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.64 | 48.0 | 3.86e-01 | 81.7% | 75.6% |
| 3t0pA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.64 | 48.0 | 3.36e-01 | 81.7% | 45.6% |
| 1q67A01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.63 | 45.0 | 3.51e-01 | 76.7% | 85.0% |
| 4dveA00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.62 | 49.0 | 3.46e-01 | 86.7% | 96.3% |
| 1tj6A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.61 | 45.0 | 3.73e-01 | 81.7% | 87.8% |
| 4b8yA02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.60 | 48.0 | 3.52e-01 | 90.0% | 86.1% |
| 2iiiA00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.59 | 41.0 | 3.34e-01 | 73.3% | 63.3% |
| 1d8cA03 | 1.20.1220.12 | Mainly Alpha › Up-down Bundle › Malate Synthase G; Chain: A; Domain 4 › Malate synthase, domain III | 0.59 | 43.0 | 3.37e-01 | 100.0% | 35.6% |
| 1ve3A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 42.0 | 2.94e-01 | 78.3% | 62.7% |
| 3eixA02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.58 | 48.0 | 3.44e-01 | 91.7% | 81.9% |
| 3g7qA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.58 | 44.0 | 3.30e-01 | 83.3% | 56.4% |
| 4n01A02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.57 | 47.0 | 3.38e-01 | 90.0% | 80.3% |
| 4jpdA00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.57 | 44.0 | 3.68e-01 | 85.0% | 58.7% |
| 4mt1A07 | 3.30.70.1440 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.56 | 43.0 | 3.67e-01 | 85.0% | 73.5% |
| 1ah5A03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.56 | 44.0 | 3.98e-01 | 88.3% | 77.9% |
| 1efdN02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.55 | 44.0 | 3.23e-01 | 90.0% | 80.7% |
| 4hs5A00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.55 | 44.0 | 3.71e-01 | 88.3% | 57.1% |
| 1kafA00 | 3.90.1150.20 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription regulator MotA, C-terminal domain | 0.55 | 40.0 | 3.34e-01 | 78.3% | 48.1% |
| 4htgA03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.55 | 44.0 | 4.03e-01 | 88.3% | 88.6% |
| 4qakA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.54 | 39.0 | 2.87e-01 | 76.7% | 77.8% |
| 2phzA02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.53 | 43.0 | 3.30e-01 | 95.0% | 96.1% |
| 2kinA00 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.52 | 41.0 | 2.81e-01 | 88.3% | 57.6% |
| 3m92A01 | 3.30.300.360 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Protein of unknown function (DUF2498) | 0.52 | 46.0 | 4.43e-01 | 98.3% | 88.4% |
| 1y4oA00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.52 | 40.0 | 3.40e-01 | 98.3% | 49.0% |
| 4uoiC00 | 3.30.160.890 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Hepatitis C virus envelope glycoprotein E1, chain C | 0.51 | 35.0 | 3.71e-01 | 90.0% | 84.3% |
| 3gmiA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.51 | 40.0 | 2.93e-01 | 100.0% | 71.2% |
| 2o30A00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 39.0 | 3.57e-01 | 86.7% | 74.4% |
| 7yh1A01 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.50 | 39.0 | 3.19e-01 | 98.3% | 44.7% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4986396 | 7527.1.1.2 ↗ | a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › CoA_transf_3 | 0.75 | 40.0 | 2.36e-01 | 83.3% | 7.1% |
| 3799246 | 3409.1.1.1 ↗ | a+b duplicates or obligate multimers › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › APG6 | 0.65 | 45.0 | 3.16e-01 | 73.3% | 42.7% |
| 3696734 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.63 | 45.0 | 2.98e-01 | 75.0% | 48.2% |
| 4014351 | 63.1.1.0 ↗ | beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain | 0.60 | 48.0 | 3.62e-01 | 88.3% | 96.6% |
| 3594926 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.60 | 47.0 | 3.59e-01 | 88.3% | 87.3% |
| 4404324 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.60 | 44.0 | 3.93e-01 | 78.3% | 72.9% |
| 3688870 | 220.1.1.93 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_6 | 0.59 | 47.0 | 3.52e-01 | 88.3% | 79.7% |
| 3178342 | 2011.1.1.8 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 | 0.59 | 42.0 | 2.74e-01 | 76.7% | 40.0% |
| 9394 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.58 | 42.0 | 2.94e-01 | 78.3% | 62.7% |
| 5026463 | 5060.1.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C › vATP-synt_AC39 | 0.58 | 50.0 | 3.72e-01 | 100.0% | 48.5% |
| 4241499 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.57 | 43.0 | 3.71e-01 | 85.0% | 85.4% |
| 3936594 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.55 | 40.0 | 3.94e-01 | 76.7% | 98.5% |
| 5042417 | 3646.1.1.1 ↗ | alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › CbiQ | 0.55 | 42.0 | 2.78e-01 | 83.3% | 19.6% |
| 3522970 | 2004.1.1.23 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom | 0.55 | 49.0 | 3.10e-01 | 100.0% | 94.3% |
| None | — | 0.54 | 45.0 | 2.62e-01 | 100.0% | 90.3% | |
| 4026008 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.54 | 43.0 | 3.86e-01 | 88.3% | 82.4% |
| 4344008 | 1.1.7.92 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_GLAA-B_I | 0.53 | 41.0 | 3.62e-01 | 88.3% | 78.9% |
| 3727868 | 4121.1.1.2 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like | 0.52 | 46.0 | 2.96e-01 | 96.7% | 42.1% |
| 3367265 | 5069.1.1.55 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › DUF1218 | 0.52 | 45.0 | 3.20e-01 | 95.0% | 56.1% |
| 3246449 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.52 | 43.0 | 3.07e-01 | 95.0% | 64.0% |
| 4246521 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.52 | 40.0 | 2.56e-01 | 83.3% | 74.3% |
| 3250581 | 3409.1.1.1 ↗ | a+b duplicates or obligate multimers › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › APG6 | 0.51 | 42.0 | 2.69e-01 | 93.3% | 44.4% |
| 3913925 | 570.1.1.1 ↗ | alpha arrays › Pre-protein crosslinking domain of SecA › Pre-protein crosslinking domain of SecA › Pre-protein crosslinking domain of SecA › SecA_PP_bind | 0.51 | 44.0 | 3.52e-01 | 100.0% | 48.0% |
| 4377496 | 613.1.1.1 ↗ | alpha complex topology › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › tRNA-synt_2c | 0.51 | 45.0 | 3.06e-01 | 100.0% | 26.7% |
| 4457710 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.50 | 43.0 | 3.40e-01 | 100.0% | 46.7% |