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OR253896.1__WNM72896.1__SEA_PERSIMMON_13__00013

Bact-Vir

OR253896.1__WNM72896.1__SEA_PERSIMMON_13__00013

Identity

Accession:
OR253896 ↗
Kingdom:
phage

Quality

92.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stanwilliamsviridae› Samistivirus› Streptomyces_phage_Persimmon

TaxID: 3075176

Cluster

View cluster (36 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-68
PDB
Domain cluster: rep: OQ504960.1__WID41994.1__X__00022__D3-68
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.68 45.0 4.94e-01 100.0% 92.0%
4lsdF00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 44.0 3.85e-01 100.0% 45.9%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 45.0 4.60e-01 98.5% 72.7%
1y6kR01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 44.0 3.88e-01 100.0% 47.1%
1x5fA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 43.0 3.56e-01 100.0% 37.5%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 48.0 5.19e-01 98.5% 96.4%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.63 40.0 4.47e-01 97.0% 86.0%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 49.0 5.24e-01 100.0% 98.3%
4xmqA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.62 41.0 3.37e-01 95.5% 34.6%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 43.0 4.43e-01 95.5% 79.0%
7u7nA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 40.0 3.62e-01 100.0% 48.5%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.58 45.0 4.35e-01 100.0% 74.0%
7razA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 37.0 3.46e-01 95.5% 50.6%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.57 43.0 3.19e-01 100.0% 31.7%
2r6fA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.57 42.0 4.16e-01 80.6% 97.2%
2z3gB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.57 42.0 3.35e-01 100.0% 40.9%
1sq2N00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 42.0 3.54e-01 100.0% 48.2%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.56 41.0 3.72e-01 100.0% 56.4%
1pg2A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.55 38.0 2.44e-01 71.6% 93.0%
5d1oA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.55 39.0 3.90e-01 77.6% 95.9%
1es6A02 2.60.510.10 Mainly Beta › Sandwich › EV matrix protein fold › EV matrix protein 0.55 46.0 4.17e-01 100.0% 98.0%
2k49A00 2.30.29.80 Mainly Beta › Roll › PH-domain like › 0.55 45.0 3.91e-01 100.0% 89.0%
1yk9A00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.54 40.0 3.02e-01 80.6% 95.7%
3pgvA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.53 36.0 3.21e-01 70.1% 56.4%
1js3A03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 36.0 3.23e-01 98.5% 48.5%
3uoxB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 38.0 2.56e-01 77.6% 97.6%
3ofgB00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 48.0 4.41e-01 100.0% 94.3%
2xigA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 36.0 3.27e-01 83.6% 52.7%
3zq5A03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.52 43.0 3.34e-01 91.0% 46.4%
4c92F00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 45.0 4.36e-01 100.0% 85.7%
2i4lA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.52 36.0 2.34e-01 73.1% 82.9%
2qnuA00 3.40.1730.10 Alpha Beta › 3-Layer(aba) Sandwich › pa0076 fold › pa0076 domain 0.51 39.0 2.93e-01 89.6% 39.3%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.51 40.0 3.62e-01 85.1% 98.9%
3jcmH04 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.51 44.0 4.27e-01 100.0% 96.1%
2o6cA00 2.60.40.2480 Mainly Beta › Sandwich › Immunoglobulin-like › Periplasmic metal-binding protein Tp34-type 0.50 39.0 3.03e-01 85.1% 97.5%
3lb6D02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 39.0 3.60e-01 88.1% 100.0%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3959440 4.1.1.180 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3107 0.85 76.0 7.78e-01 98.5% 100.0%
4231372 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.74 64.0 6.40e-01 100.0% 100.0%
4147528 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.74 63.0 6.30e-01 98.5% 100.0%
3972526 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 62.0 6.12e-01 98.5% 91.4%
5017559 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 63.0 6.39e-01 97.0% 100.0%
3932606 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.71 37.0 3.47e-01 100.0% 40.0%
3977126 4.1.1.45 ↗ beta barrels › SH3 › SH3 › SH3 › DUF903 0.69 52.0 5.62e-01 100.0% 98.2%
3968342 4.1.1.45 ↗ beta barrels › SH3 › SH3 › SH3 › DUF903 0.67 49.0 5.37e-01 97.0% 98.1%
25624 4.1.1.45 ↗ beta barrels › SH3 › SH3 › SH3 › DUF903 0.67 48.0 5.35e-01 97.0% 100.0%
135648 4.1.1.142 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq_1 0.66 46.0 4.69e-01 97.0% 75.4%
5027750 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 47.0 5.03e-01 100.0% 94.5%
3979842 4.1.1.45 ↗ beta barrels › SH3 › SH3 › SH3 › DUF903 0.64 48.0 5.23e-01 100.0% 98.2%
3839016 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 46.0 4.66e-01 100.0% 78.5%
4368811 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.63 44.0 4.82e-01 100.0% 90.9%
4432348 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 43.0 4.35e-01 100.0% 72.1%
4139090 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.62 44.0 4.71e-01 100.0% 90.9%
4932434 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.62 43.0 4.33e-01 100.0% 70.0%
5080336 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 44.0 4.49e-01 97.0% 79.7%
5000741 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.61 44.0 4.55e-01 100.0% 80.0%
4248855 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 45.0 4.40e-01 100.0% 73.0%
3590658 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 53.0 5.23e-01 100.0% 94.3%
3290899 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.60 43.0 4.26e-01 97.0% 71.4%
5029405 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.59 42.0 4.56e-01 100.0% 92.7%
4459365 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.59 46.0 4.33e-01 100.0% 70.0%
5053906 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.59 45.0 4.80e-01 100.0% 93.3%
5056826 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.58 44.0 4.46e-01 100.0% 83.1%
4093911 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.58 43.0 4.21e-01 100.0% 72.0%
4971470 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.58 44.0 4.26e-01 100.0% 72.0%
4252954 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.58 42.0 4.24e-01 100.0% 77.1%
3164638 2006.1.1.37 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › S6PP+Hydrolase_3 0.58 39.0 2.67e-01 70.1% 23.8%
4044269 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.58 42.0 4.23e-01 100.0% 75.7%
4226849 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.58 43.0 4.09e-01 100.0% 67.5%
4071824 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.57 45.0 4.34e-01 100.0% 76.0%
5050320 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.57 43.0 4.18e-01 100.0% 72.0%
4157193 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.57 42.0 4.19e-01 100.0% 77.1%
4432457 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.57 41.0 4.11e-01 100.0% 75.7%
3954254 4.1.1.387 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Rv0428c 0.56 42.0 4.30e-01 98.5% 84.6%
3591183 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 49.0 4.27e-01 100.0% 88.6%
3271973 210.2.1.1 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.56 43.0 2.88e-01 83.6% 84.5%
3280008 3115.1.1.2 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › DUF4288 0.55 49.0 4.48e-01 100.0% 80.0%
5042330 4203.1.1.0 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like 0.55 43.0 4.25e-01 88.1% 90.0%
4979291 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.55 42.0 4.05e-01 100.0% 73.3%
3968768 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.55 48.0 4.68e-01 100.0% 97.3%
3760738 4357.1.1.9 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE, WWE_3 0.54 45.0 3.56e-01 95.5% 45.0%
4120629 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.54 41.0 4.04e-01 100.0% 76.0%
4158712 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.54 40.0 4.01e-01 100.0% 78.6%
4083915 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.54 42.0 4.12e-01 100.0% 78.7%
3409172 331.23.1.3 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › IntS11_C 0.53 40.0 3.75e-01 85.1% 64.7%
4350703 286.1.1.1 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.53 36.0 3.13e-01 71.6% 44.5%
4284778 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.52 41.0 4.03e-01 100.0% 78.7%
4945161 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.52 40.0 2.99e-01 88.1% 36.3%
3742155 109.21.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nup96 0.51 38.0 2.24e-01 79.1% 19.0%
4368682 3019.1.1.1 ↗ beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › Flagellin_IN 0.51 45.0 4.06e-01 100.0% 71.6%
4400642 4.1.1.257 ↗ beta barrels › SH3 › SH3 › SH3 › Flag1_repress 0.50 43.0 4.04e-01 97.0% 85.9%