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OR253897.1__WNM73192.1__SEA_CLAMCHOWDER_78__00078
Bact-VirOR253897.1__WNM73192.1__SEA_CLAMCHOWDER_78__00078
Identity
- Accession:
- OR253897 ↗
- Kingdom:
- phage
Quality
88.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Stackebrandtviridae›
Wizardvirus›
Gordonia_phage_ClamChowder
TaxID: 3075158
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-66
Domain cluster:
rep: KR053196.1__AKJ72225.1__TPA4_60__00060__D4-66
CATH (84)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2nrqA00 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.76 | 65.0 | 4.84e-01 | 100.0% | 38.7% |
| 2x1wL02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.71 | 60.0 | 4.87e-01 | 100.0% | 50.5% |
| 2p8jA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.69 | 60.0 | 4.08e-01 | 100.0% | 37.4% |
| 2ek0A00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.68 | 58.0 | 5.03e-01 | 100.0% | 65.6% |
| 5ajiB03 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.67 | 57.0 | 4.87e-01 | 100.0% | 58.9% |
| 3qwuA03 | 3.30.70.2160 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 49.0 | 3.73e-01 | 80.4% | 86.3% |
| 2joqA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.66 | 48.0 | 4.50e-01 | 100.0% | 61.3% |
| 4g3vA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.65 | 57.0 | 4.12e-01 | 100.0% | 58.0% |
| 3uebF00 | 3.30.300.100 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like | 0.64 | 53.0 | 4.56e-01 | 100.0% | 66.0% |
| 2ab5B01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.64 | 47.0 | 3.78e-01 | 100.0% | 36.7% |
| 2nyiA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.64 | 54.0 | 4.71e-01 | 100.0% | 90.0% |
| 2k3iA01 | 3.30.70.860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 55.0 | 4.84e-01 | 100.0% | 67.1% |
| 2rrnA01 | 3.30.70.2040 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 47.0 | 4.28e-01 | 100.0% | 57.8% |
| 2p35A01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.63 | 54.0 | 3.92e-01 | 100.0% | 87.9% |
| 4z9eA00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.63 | 55.0 | 4.81e-01 | 100.0% | 65.9% |
| 4osnA00 | 2.30.29.100 | Mainly Beta › Roll › PH-domain like › | 0.63 | 52.0 | 4.34e-01 | 100.0% | 93.6% |
| 5wt3A03 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.63 | 51.0 | 3.68e-01 | 98.2% | 29.8% |
| 1yaxB00 | 3.30.450.140 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PhoQ sensor domain | 0.62 | 54.0 | 4.15e-01 | 100.0% | 73.1% |
| 3e23A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.62 | 53.0 | 3.70e-01 | 100.0% | 31.8% |
| 3pm9A04 | 3.30.70.2740 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 47.0 | 4.21e-01 | 100.0% | 56.3% |
| 3eeeA00 | 3.90.1520.10 | Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain | 0.62 | 51.0 | 3.68e-01 | 100.0% | 29.3% |
| 1jmtA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.62 | 51.0 | 4.42e-01 | 100.0% | 70.4% |
| 4gafB03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 53.0 | 4.27e-01 | 100.0% | 50.0% |
| 7o4xA01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 53.0 | 4.43e-01 | 100.0% | 84.8% |
| 3kg0A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 48.0 | 4.10e-01 | 100.0% | 51.5% |
| 5a2fA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 54.0 | 4.30e-01 | 100.0% | 50.0% |
| 3tupA02 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.61 | 48.0 | 4.23e-01 | 100.0% | 56.2% |
| 1uw4A00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.61 | 48.0 | 4.24e-01 | 100.0% | 58.2% |
| 4fprB00 | 3.30.70.2910 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 50.0 | 3.99e-01 | 100.0% | 90.6% |
| 3so5A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 50.0 | 4.12e-01 | 100.0% | 50.5% |
| 3m05B01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 43.0 | 3.80e-01 | 100.0% | 48.9% |
| 1vw4L01 | 3.90.1030.10 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 | 0.60 | 48.0 | 3.84e-01 | 100.0% | 74.8% |
| 4ozjA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 51.0 | 4.25e-01 | 100.0% | 91.3% |
| 4bbyA05 | 3.30.300.330 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.60 | 49.0 | 4.15e-01 | 100.0% | 57.4% |
| 2krbA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.60 | 49.0 | 4.43e-01 | 100.0% | 66.7% |
| 1j2vA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 49.0 | 4.18e-01 | 100.0% | 90.1% |
| 3a27A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.59 | 49.0 | 3.39e-01 | 100.0% | 26.0% |
| 5w2fA01 | 3.30.780.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain | 0.59 | 43.0 | 3.89e-01 | 98.2% | 54.7% |
| 3o4oB03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 51.0 | 4.16e-01 | 100.0% | 52.3% |
| 1sqeA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 49.0 | 4.20e-01 | 100.0% | 55.4% |
| 3duwA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 51.0 | 3.43e-01 | 100.0% | 27.9% |
| 3kp0A03 | 3.30.30.60 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain | 0.58 | 45.0 | 4.36e-01 | 100.0% | 74.6% |
| 3ce8A00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 48.0 | 4.28e-01 | 100.0% | 89.9% |
| 1bdfA01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.58 | 47.0 | 4.03e-01 | 100.0% | 55.7% |
| 4atnA03 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 46.0 | 3.40e-01 | 100.0% | 30.2% |
| 1gd8A00 | 3.90.1030.10 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 | 0.58 | 44.0 | 3.84e-01 | 94.6% | 85.7% |
| 4hl9A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 47.0 | 4.01e-01 | 100.0% | 54.3% |
| 1omsA00 | 3.30.70.1050 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain | 0.57 | 47.0 | 3.92e-01 | 100.0% | 85.1% |
| 3cwfA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.57 | 49.0 | 4.04e-01 | 100.0% | 90.7% |
| 4exkA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 46.0 | 3.78e-01 | 100.0% | 49.0% |
| 2gffA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 44.0 | 3.84e-01 | 100.0% | 53.1% |
| 2ahoB03 | 3.30.70.1130 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha | 0.57 | 47.0 | 4.09e-01 | 100.0% | 60.2% |
| 2vqeC02 | 3.30.1140.32 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain | 0.57 | 46.0 | 4.00e-01 | 100.0% | 93.0% |
| 2khdA00 | 3.30.70.860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 44.0 | 3.69e-01 | 100.0% | 47.2% |
| 2x3gA00 | 3.30.70.1910 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 47.0 | 3.84e-01 | 100.0% | 67.2% |
| 4jb9H01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 46.0 | 3.66e-01 | 100.0% | 57.3% |
| 4ponA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 46.0 | 3.45e-01 | 100.0% | 90.7% |
| 2cpxA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.56 | 42.0 | 3.94e-01 | 100.0% | 64.6% |
| 1q8bA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 45.0 | 3.87e-01 | 100.0% | 54.8% |
| 2onlC01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 44.0 | 3.91e-01 | 98.2% | 59.3% |
| 4oi3A00 | 3.30.70.3090 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ORF SCO4226, nickel-binding ferredoxin-like monomer | 0.56 | 43.0 | 3.96e-01 | 100.0% | 64.2% |
| 5tkwA01 | 3.30.420.380 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.55 | 45.0 | 3.22e-01 | 91.1% | 88.8% |
| 3mtiB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 44.0 | 3.31e-01 | 100.0% | 91.1% |
| 1j4wA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.55 | 43.0 | 4.05e-01 | 100.0% | 70.3% |
| 2cc6A00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.55 | 46.0 | 4.48e-01 | 98.2% | 84.4% |
| 1o51A00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 46.0 | 4.08e-01 | 100.0% | 93.3% |
| 1xppD00 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.55 | 41.0 | 3.55e-01 | 100.0% | 48.5% |
| 3hluA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 39.0 | 3.70e-01 | 98.2% | 61.6% |
| 5xoyB02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 44.0 | 3.75e-01 | 100.0% | 67.3% |
| 2xefA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.54 | 44.0 | 2.86e-01 | 94.6% | 97.1% |
| 1khmA00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.54 | 42.0 | 3.75e-01 | 100.0% | 57.3% |
| 2od6C00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 44.0 | 3.76e-01 | 100.0% | 57.0% |
| 3bdeB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 44.0 | 3.84e-01 | 100.0% | 56.6% |
| 3on3B00 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.54 | 46.0 | 3.32e-01 | 100.0% | 31.4% |
| 3e3pA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 45.0 | 4.10e-01 | 98.2% | 73.1% |
| 2c42A03 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.54 | 45.0 | 3.13e-01 | 100.0% | 26.9% |
| 1iujA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 46.0 | 3.85e-01 | 100.0% | 53.9% |
| 3a7eA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 39.0 | 2.81e-01 | 100.0% | 23.1% |
| 6gdxA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 41.0 | 3.54e-01 | 100.0% | 52.3% |
| 2raaA00 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.52 | 44.0 | 3.15e-01 | 100.0% | 30.9% |
| 4dn9B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 42.0 | 3.66e-01 | 100.0% | 89.7% |
| 2raqA01 | 3.30.70.1340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MTH889-like domain | 0.50 | 41.0 | 3.72e-01 | 100.0% | 94.1% |
| 3g2fA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.50 | 42.0 | 3.73e-01 | 98.2% | 63.2% |
| 4za1C00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 34.0 | 3.06e-01 | 80.4% | 45.7% |
ECOD (85)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4943808 | 882.1.1.4 ↗ | a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding | 0.76 | 66.0 | 4.79e-01 | 100.0% | 36.0% |
| 3589403 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.73 | 63.0 | 4.95e-01 | 100.0% | 45.8% |
| 3802659 | 304.8.1.66 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF7049 | 0.73 | 63.0 | 5.17e-01 | 100.0% | 55.2% |
| 5043492 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.73 | 63.0 | 5.25e-01 | 100.0% | 55.6% |
| 3499933 | 273.1.1.0 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like | 0.71 | 60.0 | 4.64e-01 | 100.0% | 41.5% |
| 4212314 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.71 | 58.0 | 4.82e-01 | 100.0% | 51.0% |
| 4173837 | 304.38.1.1 ↗ | a+b two layers › Alpha-beta plaits › Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain › Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain › PyrI | 0.71 | 58.0 | 4.90e-01 | 100.0% | 53.0% |
| 5000388 | 304.44.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 | 0.70 | 56.0 | 4.86e-01 | 100.0% | 56.7% |
| 3605491 | 328.1.1.1 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba | 0.69 | 58.0 | 4.56e-01 | 100.0% | 44.2% |
| 3663444 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.69 | 55.0 | 4.36e-01 | 100.0% | 41.6% |
| 4954449 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.68 | 54.0 | 4.64e-01 | 100.0% | 52.5% |
| 3602910 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.68 | 51.0 | 4.44e-01 | 100.0% | 52.2% |
| 3758929 | 273.1.1.2 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CEP76_C | 0.67 | 58.0 | 4.50e-01 | 100.0% | 43.1% |
| 3903912 | 304.8.1.15 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › TH_ACT | 0.67 | 55.0 | 4.51e-01 | 100.0% | 48.2% |
| 4652858 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.67 | 56.0 | 3.67e-01 | 98.2% | 29.0% |
| 3808450 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.67 | 52.0 | 4.45e-01 | 100.0% | 51.0% |
| 2159717 | 2003.1.5.13 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth | 0.67 | 53.0 | 3.79e-01 | 100.0% | 28.0% |
| 3999424 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.66 | 55.0 | 4.51e-01 | 100.0% | 49.1% |
| 3996241 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.66 | 58.0 | 4.37e-01 | 100.0% | 68.6% |
| 3479702 | 304.44.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 | 0.66 | 52.0 | 4.35e-01 | 100.0% | 48.6% |
| 3223591 | 207.1.1.247 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF28313 | 0.66 | 54.0 | 3.28e-01 | 100.0% | 14.2% |
| 3482620 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.65 | 52.0 | 3.47e-01 | 98.2% | 20.4% |
| 3789057 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.65 | 51.0 | 3.93e-01 | 100.0% | 37.0% |
| 3227174 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.65 | 56.0 | 4.87e-01 | 100.0% | 62.2% |
| 3929967 | 273.1.1.0 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like | 0.65 | 55.0 | 4.32e-01 | 100.0% | 43.1% |
| 4934117 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.64 | 51.0 | 4.54e-01 | 100.0% | 60.0% |
| 3369581 | 256.1.1.0 ↗ | a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like | 0.64 | 51.0 | 5.09e-01 | 100.0% | 90.0% |
| 4410723 | 242.1.1.2 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 | 0.64 | 51.0 | 4.29e-01 | 100.0% | 49.5% |
| 4233442 | 304.4.1.54 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Amnionless | 0.64 | 52.0 | 4.27e-01 | 100.0% | 51.7% |
| 4970335 | 304.39.1.1 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd | 0.63 | 53.0 | 4.64e-01 | 98.2% | 63.3% |
| 3163632 | 3313.1.1.1 ↗ | a+b two layers › Uncharacterized protein VC_A0919 › Uncharacterized protein VC_A0919 › Uncharacterized protein VC_A0919 › DUF406 | 0.63 | 50.0 | 4.63e-01 | 100.0% | 66.3% |
| 3476800 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.63 | 52.0 | 4.19e-01 | 100.0% | 45.0% |
| 3165967 | 3313.1.1.1 ↗ | a+b two layers › Uncharacterized protein VC_A0919 › Uncharacterized protein VC_A0919 › Uncharacterized protein VC_A0919 › DUF406 | 0.63 | 50.0 | 4.43e-01 | 100.0% | 58.9% |
| 3703618 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.63 | 50.0 | 4.31e-01 | 100.0% | 54.7% |
| 4591683 | 305.1.1.0 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase | 0.63 | 50.0 | 4.36e-01 | 100.0% | 55.8% |
| 3652417 | 2003.1.5.115 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_29 | 0.63 | 48.0 | 3.71e-01 | 100.0% | 34.5% |
| 3838763 | 304.44.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 | 0.63 | 52.0 | 4.60e-01 | 100.0% | 63.5% |
| 4188964 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.62 | 52.0 | 3.67e-01 | 100.0% | 29.4% |
| 4187841 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.62 | 52.0 | 3.73e-01 | 100.0% | 31.9% |
| 3329735 | 327.11.2.37 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_DEAH11_1st | 0.62 | 48.0 | 4.59e-01 | 100.0% | 71.4% |
| 3985634 | 3313.1.1.1 ↗ | a+b two layers › Uncharacterized protein VC_A0919 › Uncharacterized protein VC_A0919 › Uncharacterized protein VC_A0919 › DUF406 | 0.62 | 50.0 | 4.33e-01 | 100.0% | 55.0% |
| 3616172 | 304.162.1.2 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › FLAD1_M | 0.61 | 47.0 | 4.34e-01 | 100.0% | 63.7% |
| 5053097 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.61 | 47.0 | 4.12e-01 | 100.0% | 53.7% |
| 3220393 | 304.51.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related | 0.61 | 49.0 | 3.92e-01 | 100.0% | 75.6% |
| 3928715 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 52.0 | 4.16e-01 | 100.0% | 52.2% |
| 4116230 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.60 | 49.0 | 3.59e-01 | 100.0% | 31.1% |
| 4136047 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.60 | 46.0 | 4.43e-01 | 100.0% | 72.9% |
| 5034592 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.60 | 43.0 | 3.56e-01 | 80.4% | 45.5% |
| 4946218 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.60 | 46.0 | 3.87e-01 | 100.0% | 47.6% |
| 3202675 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.59 | 47.0 | 4.52e-01 | 100.0% | 78.5% |
| 4255094 | 304.28.1.35 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Amnionless | 0.59 | 50.0 | 4.14e-01 | 100.0% | 54.5% |
| 3183014 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.59 | 47.0 | 3.25e-01 | 100.0% | 23.0% |
| 3211626 | 304.162.1.2 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › FLAD1_M | 0.59 | 46.0 | 4.12e-01 | 100.0% | 60.0% |
| 3931023 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.59 | 45.0 | 3.12e-01 | 100.0% | 20.8% |
| 2330628 | 873.1.1.5 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB | 0.59 | 46.0 | 3.36e-01 | 100.0% | 28.6% |
| 4016024 | 2004.1.3.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR | 0.58 | 51.0 | 3.48e-01 | 100.0% | 27.1% |
| 3811740 | 2003.1.5.14 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_3 | 0.58 | 49.0 | 3.29e-01 | 100.0% | 25.7% |
| 167276 | 304.5.1.8 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF3240 | 0.58 | 48.0 | 4.27e-01 | 100.0% | 88.9% |
| 3675857 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.58 | 45.0 | 3.28e-01 | 100.0% | 28.1% |
| 3815471 | 387.1.5.7 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › SCRL | 0.57 | 48.0 | 4.63e-01 | 98.2% | 84.6% |
| 4162002 | 304.102.1.2 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruD | 0.57 | 44.0 | 3.29e-01 | 98.2% | 29.7% |
| 3936812 | 873.1.1.5 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB | 0.57 | 45.0 | 3.35e-01 | 100.0% | 29.7% |
| 3838404 | 872.1.1.0 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like | 0.57 | 41.0 | 4.20e-01 | 100.0% | 83.6% |
| 4937786 | 304.5.1.3 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 | 0.57 | 46.0 | 4.01e-01 | 100.0% | 89.0% |
| 3808522 | 387.1.5.7 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › SCRL | 0.56 | 45.0 | 4.51e-01 | 100.0% | 88.3% |
| 3511169 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.56 | 43.0 | 3.92e-01 | 100.0% | 60.0% |
| 3692676 | 304.4.1.4 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM | 0.56 | 44.0 | 3.85e-01 | 100.0% | 55.8% |
| 3514898 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.56 | 44.0 | 3.87e-01 | 100.0% | 57.8% |
| 3211310 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.56 | 45.0 | 3.88e-01 | 100.0% | 55.8% |
| 3586334 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.55 | 45.0 | 4.05e-01 | 100.0% | 66.7% |
| 4225218 | 304.4.1.4 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM | 0.55 | 43.0 | 3.53e-01 | 100.0% | 42.4% |
| None | — | 0.55 | 44.0 | 3.26e-01 | 100.0% | 92.0% | |
| 3938010 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.55 | 44.0 | 3.51e-01 | 100.0% | 71.4% |
| 4020396 | 3501.1.1.0 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 | 0.54 | 43.0 | 3.85e-01 | 100.0% | 61.1% |
| 3829654 | 387.1.5.7 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › SCRL | 0.54 | 45.0 | 4.49e-01 | 100.0% | 96.6% |
| 3996935 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.53 | 45.0 | 3.04e-01 | 100.0% | 45.1% |
| 3728542 | 306.5.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › GTP cyclohydrolase I feedback regulatory protein, GFRP › GTP cyclohydrolase I feedback regulatory protein, GFRP | 0.53 | 45.0 | 3.69e-01 | 100.0% | 94.5% |
| 4997480 | 2004.1.3.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR | 0.53 | 45.0 | 3.18e-01 | 100.0% | 29.1% |
| 3786206 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.53 | 42.0 | 3.82e-01 | 100.0% | 63.5% |
| 3895696 | 304.151.1.5 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › JAG1 | 0.53 | 43.0 | 3.61e-01 | 100.0% | 59.1% |
| 5030786 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.52 | 39.0 | 3.60e-01 | 100.0% | 61.3% |
| 3858557 | 304.159.1.4 ↗ | a+b two layers › Alpha-beta plaits › Alpha-beta plait domain in NisB › Alpha-beta plait domain in NisB › JAG1 | 0.52 | 42.0 | 3.53e-01 | 100.0% | 56.5% |
| 3886540 | 304.151.1.5 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › JAG1 | 0.52 | 41.0 | 3.31e-01 | 100.0% | 46.4% |
| 5041991 | 3501.1.1.0 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 | 0.50 | 38.0 | 3.46e-01 | 100.0% | 57.8% |
| 4105022 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.50 | 40.0 | 3.63e-01 | 100.0% | 90.0% |