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OR253897.1__WNM73200.1__SEA_CLAMCHOWDER_86__00086
Bact-VirOR253897.1__WNM73200.1__SEA_CLAMCHOWDER_86__00086
Identity
- Accession:
- OR253897 ↗
- Kingdom:
- phage
Quality
93.4
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Stackebrandtviridae›
Wizardvirus›
Gordonia_phage_ClamChowder
TaxID: 3075158
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 18-99
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1snzB00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.58 | 40.0 | 2.68e-01 | 70.7% | 93.0% |
| 2rsmA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 38.0 | 3.51e-01 | 76.8% | 67.0% |
| 4ckbD03 | 2.40.50.830 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 39.0 | 3.39e-01 | 82.9% | 97.0% |
| 5df7A02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.51 | 38.0 | 2.59e-01 | 80.5% | 94.2% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4022912 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.67 | 34.0 | 2.14e-01 | 95.1% | 9.9% |
| 3205535 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.62 | 48.0 | 4.97e-01 | 89.0% | 85.9% |
| 3179779 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.61 | 49.0 | 4.80e-01 | 86.6% | 80.0% |
| 4974669 | 4.1.1.458 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2098 | 0.58 | 48.0 | 4.65e-01 | 87.8% | 90.0% |
| 4177935 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.58 | 48.0 | 4.28e-01 | 90.2% | 67.0% |
| 3503323 | 376.1.2.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 | 0.57 | 39.0 | 3.48e-01 | 73.2% | 57.6% |
| 4567535 | 1203.1.2.0 ↗ | alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 | 0.56 | 52.0 | 3.47e-01 | 100.0% | 92.3% |
| 3409506 | 633.23.1.3 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › L_HMGIC_fpl | 0.53 | 49.0 | 3.63e-01 | 100.0% | 87.5% |
| 3816093 | 2011.2.1.1 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 | 0.53 | 42.0 | 2.83e-01 | 85.4% | 34.0% |
| 3619153 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.52 | 37.0 | 2.33e-01 | 73.2% | 18.8% |
| 3483955 | 386.1.1.6 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › ARS2 | 0.51 | 35.0 | 3.47e-01 | 73.2% | 68.2% |