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OR253902.1__WNM73880.1__SEA_HOLT_50__00050

Bact-Vir

OR253902.1__WNM73880.1__SEA_HOLT_50__00050

Identity

Accession:
OR253902 ↗
Kingdom:
phage

Quality

83.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-43
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2i9wA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.77 50.0 3.30e-01 76.7% 16.5%
3hn3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.77 56.0 4.19e-01 79.1% 36.5%
4ph8A00 2.60.40.2910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.71 50.0 3.44e-01 76.7% 56.0%
2yxdA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.71 55.0 3.77e-01 95.3% 26.3%
1l3iA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.70 55.0 3.77e-01 97.7% 25.9%
3j7aV00 2.40.50.1000 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 47.0 3.36e-01 86.0% 22.6%
4pkcC00 6.20.90.20 Special › Other non-globular › SH3 type barrels. › Benzylsuccinate synthase gamma subunit 0.67 43.0 4.46e-01 93.0% 70.7%
3hm2A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.66 53.0 3.66e-01 97.7% 40.4%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 47.0 3.52e-01 79.1% 33.6%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.65 48.0 4.22e-01 95.3% 52.1%
1fuwA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 42.0 3.36e-01 74.4% 33.0%
1ya5T01 2.20.160.10 Mainly Beta › Single Sheet › titin filament fold › titin domain like 0.62 45.0 3.80e-01 83.7% 70.2%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 44.0 3.43e-01 79.1% 35.9%
4bqqB02 3.90.1750.20 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 0.60 41.0 2.78e-01 95.3% 16.8%
2afsA00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.60 50.0 3.00e-01 100.0% 18.3%
1cx8A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.58 48.0 2.95e-01 100.0% 19.9%
2zf3C00 2.50.20.30 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.58 40.0 2.76e-01 76.7% 18.7%
6tmfM00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.58 45.0 3.65e-01 97.7% 55.9%
3aonA00 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 38.0 2.56e-01 76.7% 15.4%
1ms9A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.57 47.0 2.83e-01 100.0% 36.9%
2xzmJ00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.56 42.0 3.45e-01 97.7% 55.2%
3f1yA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.56 46.0 2.70e-01 90.7% 65.4%
2ek0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.55 44.0 3.65e-01 100.0% 81.1%
4inaA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 44.0 2.93e-01 95.3% 83.2%
6qcbA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.55 35.0 2.77e-01 79.1% 24.7%
3bp6B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 38.0 3.13e-01 76.7% 54.5%
4mh4A02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.55 43.0 3.47e-01 93.0% 43.6%
3qt2A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 46.0 3.44e-01 97.7% 79.6%
7b1cD01 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.54 42.0 3.54e-01 95.3% 93.2%
2bjoA02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.54 42.0 3.43e-01 93.0% 46.8%
2d8bA01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.54 40.0 2.92e-01 83.7% 39.3%
3og5A01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.53 43.0 3.61e-01 100.0% 70.6%
4k3cA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.53 42.0 3.61e-01 100.0% 76.8%
3up1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 42.0 3.36e-01 97.7% 76.9%
7t4dA01 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.53 38.0 2.41e-01 83.7% 62.2%
2ql8A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.52 40.0 3.01e-01 93.0% 28.6%
4cbgD02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 38.0 2.76e-01 90.7% 90.7%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.52 39.0 2.62e-01 97.7% 67.4%
3bzwF00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.52 39.0 2.59e-01 97.7% 44.4%
2be3B01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.51 42.0 3.06e-01 100.0% 57.0%
3wp4A00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.51 44.0 2.76e-01 100.0% 39.0%
2znhA03 6.20.40.10 Special › Other non-globular › Porin MspA ribbon fold › 0.50 35.0 3.52e-01 83.7% 80.9%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4351239 4967.1.1.6 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2 0.78 54.0 3.83e-01 74.4% 27.7%
3260887 5090.1.1.7 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › HAP2-GCS1 0.74 51.0 3.26e-01 72.1% 15.5%
3705135 101.17.1.3 alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › HU-CCDC81_euk_1 0.72 56.0 4.31e-01 83.7% 91.0%
3598322 2487.1.1.0 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.71 45.0 3.12e-01 74.4% 18.6%
3912477 5001.1.1.5 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 0.71 61.0 3.67e-01 100.0% 34.7%
4926797 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.71 53.0 3.85e-01 100.0% 28.5%
5056319 177.1.1.0 alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease 0.71 48.0 3.14e-01 72.1% 16.8%
None 0.71 57.0 3.83e-01 100.0% 38.7%
3717787 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.70 45.0 2.61e-01 83.7% 6.9%
5025539 2003.1.5.179 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 0.70 57.0 3.78e-01 100.0% 37.5%
3969015 7503.1.1.8 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › DUF4136 0.70 48.0 3.40e-01 72.1% 49.3%
4856794 304.112.1.0 a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.69 48.0 4.13e-01 76.7% 42.9%
3709357 2003.1.1.59 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_5 0.69 49.0 3.17e-01 79.1% 17.9%
5035417 3010.1.1.0 a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains 0.68 47.0 3.74e-01 74.4% 32.6%
4972556 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 54.0 4.51e-01 100.0% 48.2%
3465489 304.112.1.0 a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.68 50.0 3.74e-01 83.7% 38.3%
5036805 3010.1.1.2 a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › Lon_C 0.68 45.0 3.57e-01 79.1% 31.6%
5037750 3926.1.1.1 alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.68 44.0 2.86e-01 74.4% 14.4%
3728856 171.1.1.9 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3, Ribonucleas_3_3 0.66 36.0 2.28e-01 100.0% 10.2%
5007926 210.1.2.1 a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase 0.65 53.0 2.89e-01 95.3% 5.5%
1311761 374.1.1.2 few secondary structure elements › HIPIP (high potential iron protein) › HIPIP (high potential iron protein) › HIPIP (high potential iron protein) › BssC_TutF 0.65 43.0 4.42e-01 93.0% 78.4%
4946616 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.65 45.0 3.68e-01 76.7% 48.9%
5012323 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.64 46.0 2.71e-01 76.7% 10.1%
3515207 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.64 48.0 3.96e-01 100.0% 42.2%
5030500 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.63 52.0 3.72e-01 97.7% 52.9%
4989866 205.1.1.17 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_11 0.63 52.0 3.34e-01 95.3% 31.8%
4973031 2003.1.5.2 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › RrnaAD 0.61 51.0 3.44e-01 100.0% 41.7%
5019603 3010.1.1.0 a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains 0.61 42.0 3.44e-01 76.7% 56.8%
3997193 5001.1.1.41 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.61 48.0 2.92e-01 100.0% 32.9%
4538250 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.60 50.0 3.59e-01 95.3% 34.1%
3376353 2003.1.5.382 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_12, Methyltransf_16 0.60 50.0 2.89e-01 100.0% 11.9%
5052927 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 51.0 3.66e-01 100.0% 36.3%
3236416 5001.1.1.41 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.60 47.0 2.86e-01 97.7% 33.1%
3942790 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.60 40.0 3.63e-01 76.7% 47.7%
5034346 207.2.1.13 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.60 41.0 2.51e-01 76.7% 9.6%
3927041 4.1.1.25 beta barrels › SH3 › SH3 › SH3 › PAZ 0.59 47.0 3.48e-01 95.3% 51.5%
3440228 7579.1.1.14 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 0.59 50.0 3.01e-01 100.0% 81.2%
5022277 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.59 48.0 3.55e-01 97.7% 56.2%
3717169 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.59 41.0 2.71e-01 76.7% 18.0%
4951750 2011.1.1.8 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.59 49.0 3.06e-01 100.0% 20.4%
4466937 11.1.1.248 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › bMG6 0.58 39.0 2.93e-01 81.4% 23.8%
4021847 2011.1.1.8 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.58 46.0 2.87e-01 100.0% 20.7%
4506892 223.1.1.44 a+b three layers › Profilin-like › sensor domains › sensor domains › Per3-like_PAS-A 0.58 48.0 3.59e-01 100.0% 89.2%
4444613 6086.1.1.0 extended segments › N-terminal domain of small heat shock protein Tsp36 › N-terminal domain of small heat shock protein Tsp36 › N-terminal domain of small heat shock protein Tsp36 0.57 47.0 2.92e-01 97.7% 31.5%
3503534 5057.1.1.1 alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb 0.57 41.0 2.92e-01 90.7% 24.1%
3932435 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.56 45.0 2.78e-01 100.0% 34.9%
4940944 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.56 46.0 3.43e-01 97.7% 56.0%
3771322 233.1.1.3 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_II_alpha 0.56 37.0 2.96e-01 72.1% 29.6%
3980170 330.1.1.14 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › RecT 0.55 47.0 3.34e-01 100.0% 89.3%
5050213 192.2.1.87 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ATP-synt_D 0.55 47.0 3.10e-01 100.0% 30.0%
5075588 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.55 38.0 3.19e-01 79.1% 50.0%
3687618 304.9.1.79 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF28976 0.55 43.0 3.03e-01 100.0% 24.8%
2579238 324.1.1.1 a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.54 41.0 2.98e-01 95.3% 27.1%
4009783 205.1.1.0 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin 0.53 40.0 2.79e-01 97.7% 29.5%
3287591 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.52 40.0 2.25e-01 93.0% 5.8%
4035686 4959.1.1.1 a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.52 37.0 2.77e-01 79.1% 39.3%
4954522 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.51 36.0 3.05e-01 95.3% 38.3%
3585474 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.50 37.0 3.04e-01 93.0% 47.6%