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OR253904.1__WNM74098.1__SEA_NERGAL_7__00007

Bact-Vir

OR253904.1__WNM74098.1__SEA_NERGAL_7__00007

Identity

Accession:
OR253904 ↗
Kingdom:
phage

Quality

74.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mycobacterium_Phage_Nergal

TaxID: 3075167

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-145
PDB
Domain cluster: rep: MN234170.1__QFG08859.1__PBI_MALAGASYROSE_9__00007__D1-131
D2 medium residues 146-272
PDB
Domain cluster: rep: KC661275.1__AGK87492.1__PBI_HINDER_13__00013__D189-335
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25310.2 best VG15 46.9 5.70e-12 63.8% 23.1%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3168742 102.2.1.1 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › RrnaAD 0.53 31.0 3.40e-01 100.0% 68.9%
D3 medium residues 316-376_492-524
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vo9A01 3.30.1380.10 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › 0.55 38.0 3.47e-01 73.4% 97.7%
5egwA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 42.0 2.88e-01 90.4% 50.1%
1w36D01 1.10.10.1020 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RecBCD complex, subunit RecD, N-terminal domain 0.51 35.0 3.33e-01 78.7% 60.6%
6gyhA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.51 43.0 3.31e-01 94.7% 65.8%
5xfaA04 1.20.1440.230 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.50 33.0 3.45e-01 88.3% 74.1%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3443208 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.52 35.0 3.71e-01 73.4% 80.0%
3664902 101.1.10.7 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.50 38.0 3.80e-01 83.0% 79.0%
D4 medium residues 377-491
PDB
Domain cluster: rep: MW862982.1__QWY81909.1__SEA_SICARIUS2_4__00004__D502-582
D5 medium residues 527-593
PDB