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OR257569.1__WNL50784.1__RPALISO_197__00166

Bact-Vir

OR257569.1__WNL50784.1__RPALISO_197__00166

Identity

Accession:
OR257569 ↗
Kingdom:
phage

Quality

87.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-62
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fmbA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.65 44.0 3.67e-01 78.0% 39.4%
1h7zA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.63 47.0 3.31e-01 79.7% 26.2%
4p2iA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.63 53.0 4.26e-01 94.9% 70.9%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.62 42.0 4.55e-01 78.0% 91.3%
3oloA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 40.0 3.29e-01 76.3% 35.1%
2b02A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 42.0 3.56e-01 78.0% 41.3%
4dduA07 2.60.510.20 Mainly Beta › Sandwich › EV matrix protein fold › 0.61 49.0 4.05e-01 89.8% 57.0%
6fgjA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.60 43.0 3.23e-01 78.0% 30.0%
1oygA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 46.0 2.73e-01 83.1% 18.4%
3icyA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 41.0 3.35e-01 78.0% 35.6%
3h9wA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 39.0 3.26e-01 74.6% 36.7%
4f3lA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 40.0 3.28e-01 76.3% 35.2%
4u13A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 38.0 3.15e-01 76.3% 34.9%
5iu1B00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 44.0 3.73e-01 100.0% 45.5%
2daxA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.58 40.0 3.06e-01 78.0% 29.8%
3rtyB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 41.0 3.44e-01 76.3% 45.0%
4l8hB00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.58 39.0 3.15e-01 79.7% 33.3%
3ewkA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 39.0 3.36e-01 78.0% 40.8%
1bywA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 38.0 3.15e-01 74.6% 36.4%
4hoiB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 38.0 3.13e-01 74.6% 35.1%
1s67L00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 37.0 3.04e-01 74.6% 32.8%
7pkwA01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 36.0 3.07e-01 78.0% 35.0%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.57 43.0 3.39e-01 83.1% 66.4%
7a6pB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 38.0 2.95e-01 76.3% 29.7%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.56 40.0 3.91e-01 78.0% 72.1%
6xw5A01 2.40.510.10 Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses 0.56 46.0 3.41e-01 96.6% 87.9%
6kjuB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 39.0 3.25e-01 84.7% 37.6%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.56 35.0 3.28e-01 84.7% 47.5%
2zxrA01 2.40.50.460 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 39.0 2.90e-01 74.6% 50.0%
3pxpA02 3.30.450.180 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.55 35.0 2.54e-01 72.9% 19.6%
3obqA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.55 40.0 3.11e-01 81.4% 33.3%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 39.0 2.35e-01 79.7% 12.6%
3zqmA00 6.10.140.2160 Special › Helix non-globular › Helix Hairpins › 0.54 36.0 3.69e-01 86.4% 71.2%
2gj3A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 36.0 2.97e-01 79.7% 35.3%
1d06A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 35.0 2.85e-01 78.0% 31.5%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.53 40.0 2.96e-01 86.4% 86.0%
3h51A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 38.0 2.99e-01 91.5% 33.1%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.53 40.0 3.28e-01 88.1% 55.9%
2o3oA01 2.40.128.690 Mainly Beta › Beta Barrel › Lipocalin › YycH protein, domain 3-like 0.52 40.0 3.28e-01 84.7% 93.4%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.52 32.0 3.32e-01 74.6% 63.2%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 42.0 3.56e-01 94.9% 55.5%
3fhwA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 41.0 3.60e-01 94.9% 55.6%
2ebkA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.51 37.0 2.96e-01 78.0% 35.9%
6lofA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.51 35.0 2.67e-01 74.6% 50.0%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 39.0 3.24e-01 94.9% 46.4%
2hj1A00 3.10.20.280 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like 0.50 31.0 2.93e-01 74.6% 46.8%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3214289 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.70 58.0 4.76e-01 94.9% 59.1%
4018672 4.1.1.225 beta barrels › SH3 › SH3 › SH3 › DUF7025 0.68 57.0 4.60e-01 93.2% 52.2%
3489971 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 56.0 4.52e-01 96.6% 58.3%
3925865 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.66 55.0 4.47e-01 96.6% 56.7%
3718687 220.1.1.175 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_31 0.65 49.0 3.73e-01 84.7% 34.0%
3625971 216.1.1.3 a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.64 48.0 3.63e-01 81.4% 34.5%
3598658 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 49.0 3.75e-01 91.5% 34.8%
3490141 216.1.1.3 a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.63 46.0 3.57e-01 81.4% 34.5%
3913149 216.1.1.3 a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.62 45.0 3.49e-01 81.4% 33.3%
3463768 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 48.0 3.03e-01 86.4% 85.3%
3927710 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.61 51.0 3.75e-01 94.9% 60.6%
3891434 216.1.1.3 a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.61 45.0 3.55e-01 83.1% 67.9%
3623547 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.61 50.0 4.78e-01 94.9% 87.1%
3634173 216.1.1.3 a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.60 43.0 3.34e-01 81.4% 32.3%
3347601 216.1.1.3 a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.60 44.0 3.38e-01 83.1% 63.9%
3817752 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 38.0 3.60e-01 76.3% 52.9%
4997962 304.139.1.2 a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.60 50.0 3.37e-01 100.0% 58.8%
3892129 216.1.1.3 a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.59 43.0 3.44e-01 83.1% 66.4%
4506892 223.1.1.44 a+b three layers › Profilin-like › sensor domains › sensor domains › Per3-like_PAS-A 0.59 42.0 3.43e-01 78.0% 47.5%
5042117 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.59 42.0 3.35e-01 76.3% 85.6%
5043905 3435.1.1.0 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.59 49.0 3.35e-01 94.9% 39.1%
4013325 4.1.1.225 beta barrels › SH3 › SH3 › SH3 › DUF7025 0.58 47.0 3.80e-01 93.2% 55.2%
3882182 220.1.1.132 beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.58 45.0 3.63e-01 100.0% 40.8%
5036533 3435.1.1.0 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.58 49.0 3.35e-01 96.6% 39.1%
3788285 395.1.1.4 few secondary structure elements › Midkine-related › Midkine-related › Midkine-related › Flocculin_t3 0.58 42.0 4.39e-01 79.7% 96.0%
4018634 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.58 42.0 3.48e-01 79.7% 43.5%
4084495 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.57 46.0 3.89e-01 96.6% 51.4%
1233328 4.1.1.116 beta barrels › SH3 › SH3 › SH3 › SH3_14 0.57 43.0 3.42e-01 84.7% 66.9%
5082808 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.57 47.0 2.64e-01 98.3% 33.1%
5029482 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.57 47.0 4.33e-01 96.6% 75.0%
3924732 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.56 47.0 3.42e-01 100.0% 93.7%
3693249 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.56 44.0 3.60e-01 94.9% 72.3%
3959244 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.56 39.0 3.52e-01 84.7% 50.0%
3860882 11.1.1.1025 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF4556 0.55 39.0 3.30e-01 78.0% 46.4%
3503098 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.55 38.0 3.42e-01 76.3% 47.4%
3683658 2484.1.1.157 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.55 46.0 2.90e-01 98.3% 26.9%
3188712 4.1.1.225 beta barrels › SH3 › SH3 › SH3 › DUF7025 0.55 44.0 3.82e-01 94.9% 55.0%
4864011 1.1.7.41 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › UPF1_1B_dom 0.55 37.0 3.11e-01 78.0% 39.0%
5018491 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.55 39.0 2.51e-01 83.1% 14.8%
4980710 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 37.0 3.10e-01 74.6% 35.7%
4514345 274.1.1.50 a+b two layers › Pili subunits › Pili subunits › Pili subunits › Spore_YunB 0.55 39.0 3.06e-01 79.7% 88.3%
4017266 101.1.8.10 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › DUF3435 0.54 44.0 3.26e-01 100.0% 61.0%
3940677 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.54 46.0 3.30e-01 100.0% 57.9%
3282536 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.54 41.0 3.77e-01 86.4% 80.0%
3402269 2.1.1.4 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.53 44.0 3.76e-01 100.0% 74.5%
4149046 243.3.1.60 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF5385 0.53 39.0 3.55e-01 84.7% 55.6%
4122961 2.1.1.122 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.53 42.0 3.61e-01 89.8% 55.0%
4068016 2.1.1.122 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.53 42.0 3.54e-01 89.8% 53.3%
3270992 216.1.1.3 a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.53 41.0 3.24e-01 89.8% 67.1%
4965857 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.53 42.0 4.10e-01 94.9% 98.6%
4017740 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 44.0 3.57e-01 94.9% 47.5%
317 2.1.1.122 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.52 42.0 3.56e-01 94.9% 55.5%
3236717 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 37.0 3.10e-01 76.3% 67.3%
3197288 74.1.1.0 beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain 0.52 36.0 3.81e-01 78.0% 88.0%
3926482 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.52 42.0 2.84e-01 100.0% 30.7%
4264144 2.1.1.122 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.52 43.0 3.65e-01 96.6% 91.4%
3990877 2492.1.1.2 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.52 35.0 3.00e-01 76.3% 38.3%
4949862 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.52 37.0 2.85e-01 78.0% 31.0%
4000011 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 37.0 3.21e-01 79.7% 94.3%
3211024 221.13.1.0 a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain 0.51 42.0 3.60e-01 96.6% 92.4%
5028105 1.1.1.1 beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp 0.51 37.0 2.99e-01 79.7% 60.0%
3715923 5.1.3.28 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.51 40.0 2.49e-01 91.5% 27.6%
3579172 883.1.1.0 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.51 36.0 2.55e-01 79.7% 22.6%
1555393 2.1.1.4 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.51 41.0 3.33e-01 98.3% 60.8%
3284948 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 40.0 3.68e-01 94.9% 70.6%