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OR258281.1__WNA15660.1__XaC1_17__00017

Bact-Vir

OR258281.1__WNA15660.1__XaC1_17__00017

Identity

Accession:
OR258281 ↗
Kingdom:
phage

Quality

70.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_XaC1

TaxID: 3073039

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-61
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6h8oA00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.69 59.0 5.16e-01 100.0% 92.6%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.61 41.0 4.08e-01 71.7% 74.2%
1vw4U00 3.30.1390.20 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L30/L7 0.60 46.0 4.22e-01 85.0% 86.6%
5ja1B00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.59 46.0 4.50e-01 90.0% 78.8%
3hh2D01 3.90.290.10 Alpha Beta › Alpha-Beta Complex › Extracellular Matrix Fibrillin › TGF-beta binding (TB) domain 0.57 43.0 3.77e-01 81.7% 55.9%
2hfqA00 3.10.510.10 Alpha Beta › Roll › NE1680-like fold › NE1680-like 0.55 45.0 4.08e-01 93.3% 94.1%
4p78A00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 37.0 3.37e-01 70.0% 98.8%
3r5dA01 3.30.70.2010 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 41.0 3.37e-01 86.7% 96.9%
3b4vD01 3.90.290.10 Alpha Beta › Alpha-Beta Complex › Extracellular Matrix Fibrillin › TGF-beta binding (TB) domain 0.55 42.0 4.05e-01 85.0% 74.3%
5cecA02 3.50.80.20 Alpha Beta › 3-Layer(bba) Sandwich › D-tyrosyl-trna(Tyr) Deacylase; Chain: A; › D-Ala-D-Ala carboxypeptidase C, peptidase S13 0.55 43.0 3.22e-01 90.0% 84.7%
2pnqA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.54 42.0 2.64e-01 90.0% 86.1%
1uxtA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.52 41.0 2.86e-01 98.3% 81.0%
4mzyA01 3.20.140.10 Alpha Beta › Alpha-Beta Barrel › nicotinate phosphoribosyltransferase › nicotinate phosphoribosyltransferase 0.52 43.0 2.84e-01 100.0% 30.8%
2pn1A03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 43.0 3.57e-01 100.0% 99.2%
6pwkA02 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.50 34.0 2.43e-01 73.3% 61.5%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4236834 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.67 57.0 5.17e-01 100.0% 89.4%
3313016 3397.1.1.2 ↗ a+b complex topology › Tic22 › Tic22 › Tic22 › DUF3110 0.61 52.0 4.27e-01 100.0% 71.7%
4283097 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 54.0 4.81e-01 100.0% 76.5%
4093378 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 53.0 4.87e-01 100.0% 83.7%
3486057 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.60 40.0 4.03e-01 70.0% 68.3%
3837949 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 50.0 3.26e-01 100.0% 20.3%
4212328 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 52.0 4.62e-01 100.0% 77.6%
3899941 2003.1.5.156 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr, Methyltransf_31 0.56 42.0 2.63e-01 90.0% 25.2%
3913637 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.55 37.0 3.32e-01 70.0% 67.8%
3476671 370.1.1.2 ↗ few secondary structure elements › TB module/8-cys domain › TB module/8-cys domain › TB module/8-cys domain › FST_N 0.55 42.0 4.17e-01 91.7% 85.7%
3845351 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.55 37.0 3.32e-01 70.0% 68.9%
4998684 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 38.0 3.31e-01 73.3% 74.7%
4979159 2002.4.1.3 ↗ a/b barrels › TIM beta/alpha-barrel › Nicotinate/Quinolinate PRTase C-terminal domain-like › Nicotinate/Quinolinate PRTase C-terminal domain-like › NAPRTase_C 0.54 48.0 3.02e-01 100.0% 25.1%
3282260 375.12.1.0 ↗ few secondary structure elements › Rubredoxin-like › Nicotinate phosphoribosyltransferase C-terminal domain-related › Nicotinate phosphoribosyltransferase C-terminal domain-related 0.54 47.0 4.17e-01 100.0% 94.4%
None — 0.53 36.0 2.33e-01 75.0% 44.4%
4927005 3127.1.1.1 ↗ beta sandwiches › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › DUF192 0.53 43.0 3.45e-01 91.7% 48.0%
3903229 375.12.1.1 ↗ few secondary structure elements › Rubredoxin-like › Nicotinate phosphoribosyltransferase C-terminal domain-related › Nicotinate phosphoribosyltransferase C-terminal domain-related › NAPRTase_C 0.53 46.0 3.71e-01 100.0% 85.8%
3705774 223.2.1.42 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Synaptobrevin 0.52 39.0 2.71e-01 83.3% 51.6%
5037430 5104.1.1.1 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.51 39.0 3.11e-01 100.0% 40.8%