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OR258281.1__WNA15663.1__XaC1_20__00020

Bact-Vir

OR258281.1__WNA15663.1__XaC1_20__00020

Identity

Accession:
OR258281 ↗
Kingdom:
phage

Quality

79.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_XaC1

TaxID: 3073039

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-69
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.85 58.0 5.59e-01 100.0% 63.8%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.83 58.0 5.54e-01 100.0% 63.4%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 57.0 5.58e-01 100.0% 69.7%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 58.0 5.81e-01 100.0% 77.8%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 56.0 6.08e-01 100.0% 94.1%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 53.0 5.28e-01 100.0% 70.3%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.75 63.0 5.20e-01 100.0% 52.3%
4a4kA02 2.30.30.1160 Mainly Beta › Roll › SH3 type barrels. › 0.72 66.0 5.04e-01 100.0% 60.2%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.72 53.0 5.40e-01 100.0% 81.7%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 45.0 3.95e-01 100.0% 52.1%
1jmxA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.60 52.0 4.40e-01 100.0% 90.8%
6dxwA01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.58 43.0 2.95e-01 80.6% 100.0%
3lhnA00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.57 49.0 4.19e-01 100.0% 86.0%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 47.0 3.92e-01 100.0% 50.4%
3e8tA00 3.15.10.30 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain 0.57 49.0 3.42e-01 100.0% 73.6%
3r07C00 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.56 46.0 4.17e-01 93.5% 97.7%
1lqvB00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.55 42.0 3.05e-01 83.9% 87.3%
2qdeA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 47.0 3.69e-01 100.0% 94.9%
3q90B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 44.0 3.55e-01 93.5% 79.2%
4e1sA00 2.40.160.160 Mainly Beta › Beta Barrel › Porin › Inverse autotransporter, beta-domain 0.54 47.0 3.19e-01 100.0% 82.6%
2o5nA02 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.53 46.0 3.48e-01 100.0% 51.0%
3a2yA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.53 45.0 3.29e-01 100.0% 40.0%
2imjD01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 43.0 3.41e-01 95.2% 71.1%
6r3wA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 45.0 3.41e-01 100.0% 88.2%
3bbjA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.52 39.0 2.62e-01 83.9% 36.0%
2vsmA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.52 42.0 2.55e-01 90.3% 83.8%
2cwzA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 40.0 3.12e-01 83.9% 78.1%
5hp6A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 42.0 2.71e-01 95.2% 78.8%
3rqbA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.51 39.0 2.61e-01 85.5% 37.1%
6a97C01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.51 39.0 3.14e-01 85.5% 93.9%
1vkdA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.50 40.0 2.62e-01 95.2% 85.3%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3737903 4.1.1.286 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7072 0.82 57.0 6.06e-01 98.4% 81.8%
3244497 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.79 58.0 4.29e-01 100.0% 32.0%
3520654 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.77 57.0 4.23e-01 100.0% 32.7%
3514556 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 58.0 5.60e-01 100.0% 72.9%
5080336 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 55.0 5.46e-01 100.0% 76.6%
3841414 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.73 57.0 5.49e-01 100.0% 74.3%
3271407 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 62.0 5.60e-01 100.0% 69.4%
3290160 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.73 60.0 5.50e-01 100.0% 70.0%
3473205 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 66.0 4.81e-01 100.0% 39.4%
3333322 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.73 58.0 4.50e-01 100.0% 40.0%
5077969 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 58.0 5.33e-01 100.0% 67.5%
3601070 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 63.0 6.25e-01 100.0% 90.8%
4574546 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 54.0 5.40e-01 100.0% 78.5%
4982722 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.71 61.0 5.42e-01 100.0% 67.1%
4929743 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 64.0 4.66e-01 100.0% 55.8%
4940673 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 51.0 5.20e-01 100.0% 80.0%
3368864 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.71 57.0 5.63e-01 100.0% 83.1%
3709279 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 63.0 5.51e-01 100.0% 66.7%
4205852 5087.2.1.2 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 0.69 61.0 4.03e-01 100.0% 84.3%
4268386 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 50.0 4.91e-01 100.0% 71.4%
3595833 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.68 60.0 5.15e-01 100.0% 62.1%
3554026 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.68 51.0 5.26e-01 100.0% 85.0%
3217770 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 52.0 4.42e-01 100.0% 51.0%
3553983 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.66 51.0 5.17e-01 100.0% 85.0%
4466506 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 55.0 5.23e-01 100.0% 77.3%
4069560 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 57.0 5.41e-01 100.0% 80.0%
3313139 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.66 58.0 4.20e-01 100.0% 41.7%
2410381 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.65 58.0 5.35e-01 100.0% 78.5%
3645395 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.65 58.0 5.36e-01 100.0% 88.7%
3587906 4.1.1.46 ↗ beta barrels › SH3 › SH3 › SH3 › VEG 0.65 55.0 5.11e-01 100.0% 73.8%
3677709 4.1.1.103 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_12 0.65 58.0 5.34e-01 100.0% 88.7%
3390985 883.1.1.3 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › JHBP 0.65 53.0 3.64e-01 91.9% 51.8%
3357709 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.64 57.0 5.15e-01 100.0% 74.1%
3973881 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.64 58.0 4.41e-01 100.0% 72.9%
3342793 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.64 56.0 3.99e-01 100.0% 33.2%
3065351 9.3.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.63 55.0 4.38e-01 100.0% 89.8%
5004539 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.62 56.0 4.08e-01 100.0% 52.1%
4793345 9.3.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.62 55.0 4.61e-01 100.0% 91.6%
3502085 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 52.0 4.59e-01 100.0% 67.0%
3299054 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 45.0 2.79e-01 83.9% 95.8%
3625263 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 54.0 4.53e-01 100.0% 63.0%
3900017 4.1.1.284 ↗ beta barrels › SH3 › SH3 › SH3 › SBNO 0.58 46.0 3.78e-01 100.0% 46.7%
3519781 517.2.1.0 ↗ beta barrels › CBF-like › TraF › TraF 0.57 46.0 3.38e-01 95.2% 78.9%
3735005 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.56 48.0 3.31e-01 98.4% 81.7%
3674460 2484.1.1.157 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.54 41.0 2.82e-01 82.3% 50.2%
4575618 883.1.1.3 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › JHBP 0.54 46.0 3.28e-01 100.0% 74.9%
4029991 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 45.0 2.83e-01 98.4% 22.4%
3367448 2484.1.1.157 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.53 40.0 2.43e-01 83.9% 77.1%
3517882 2484.1.1.215 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27041 0.53 39.0 2.38e-01 80.6% 83.7%
3377696 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.53 43.0 3.09e-01 93.5% 34.0%
4003694 2484.1.1.50 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT 0.52 40.0 2.48e-01 85.5% 96.8%
4977352 244.3.1.4 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › Lip_prot_lig_C 0.52 45.0 3.87e-01 100.0% 98.1%
5057041 244.3.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.52 43.0 3.95e-01 96.8% 97.7%
3813290 2484.1.1.198 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT, DUF4371 0.52 40.0 2.46e-01 83.9% 93.4%
5056583 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.52 36.0 2.93e-01 80.6% 36.8%
1172092 222.1.1.15 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_3C 0.52 39.0 3.05e-01 83.9% 62.9%
3420880 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 38.0 2.34e-01 83.9% 85.5%
3374157 2484.1.1.157 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.51 40.0 2.37e-01 85.5% 78.6%
3234953 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.51 45.0 3.11e-01 100.0% 68.8%
3907772 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.50 36.0 2.46e-01 80.6% 45.4%
3449040 9.1.1.34 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › PAP_fibrillin 0.50 42.0 3.18e-01 100.0% 69.1%
3310314 2484.1.1.157 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.50 39.0 2.46e-01 85.5% 93.7%