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OR258281.1__WNA15870.1__XaC1_227__00227

Bact-Vir

OR258281.1__WNA15870.1__XaC1_227__00227

Identity

Accession:
OR258281 ↗
Kingdom:
phage

Quality

80.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_XaC1

TaxID: 3073039

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 35-96
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8alzB08 1.10.3380.10 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain 0.62 45.0 3.56e-01 77.4% 83.2%
7x4oB01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.58 40.0 3.39e-01 80.6% 41.4%
2napA03 3.40.228.10 Alpha Beta › 3-Layer(aba) Sandwich › Dimethylsulfoxide Reductase; domain 2 › Dimethylsulfoxide Reductase, domain 2 0.57 39.0 2.62e-01 87.1% 18.5%
3qc7A02 6.10.140.1630 Special › Helix non-globular › Helix Hairpins › 0.55 37.0 4.03e-01 74.2% 86.3%
3s3lA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.54 39.0 3.02e-01 77.4% 98.1%
6zhhA01 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.54 38.0 2.78e-01 74.2% 100.0%
4linD01 1.20.5.340 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.53 39.0 3.05e-01 80.6% 35.4%
1w36B03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 38.0 2.51e-01 83.9% 19.1%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3616093 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.62 51.0 3.77e-01 100.0% 95.8%
3505597 7516.1.1.85 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_tranf_2_4 0.61 43.0 2.76e-01 74.2% 37.3%
3183787 3012.1.1.10 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › ISN1 0.59 41.0 3.57e-01 74.2% 78.0%
4003270 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.58 46.0 3.05e-01 95.2% 35.8%
5012709 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 43.0 2.92e-01 95.2% 21.3%
3582590 3291.1.1.9 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › DUF2371 0.56 45.0 3.70e-01 90.3% 80.0%
3481125 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.55 46.0 3.66e-01 100.0% 78.6%
5017955 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.53 40.0 3.26e-01 85.5% 77.8%
5018928 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.53 39.0 3.19e-01 83.9% 75.6%
10501 7529.1.1.0 ↗ a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like 0.52 37.0 2.84e-01 75.8% 65.6%
4943989 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.52 40.0 3.16e-01 93.5% 93.8%
4950939 7512.1.1.15 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyphos_transf 0.50 41.0 3.06e-01 93.5% 87.1%