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OR258281.1__WNA15978.1__XaC1_335__00335

Bact-Vir

OR258281.1__WNA15978.1__XaC1_335__00335

Identity

Accession:
OR258281 ↗
Kingdom:
phage

Quality

74.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_XaC1

TaxID: 3073039

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-89
PDB
Domain cluster: rep: SR-VP_0-2_scaffold_141_4939684_prodigal-single.1__X__X__00002__D80-154
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 57.0 5.91e-01 96.3% 98.6%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 50.0 5.42e-01 82.7% 97.0%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 50.0 5.47e-01 80.2% 100.0%
3nmzD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 47.0 4.66e-01 86.4% 77.4%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.60 44.0 3.72e-01 76.5% 95.4%
3hwuA00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.60 44.0 3.73e-01 80.2% 57.6%
2lsmA00 3.40.5.70 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › DNA packaging chaperone protein FI, C-terminal beta-strand domain 0.59 36.0 4.01e-01 77.8% 80.3%
2hx0A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.59 43.0 3.73e-01 79.0% 54.5%
4gouA02 2.30.29.200 Mainly Beta › Roll › PH-domain like › 0.57 40.0 3.21e-01 71.6% 58.9%
5by5A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 37.0 3.40e-01 81.5% 47.8%
3htnB00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.57 42.0 3.59e-01 80.2% 54.0%
3bcwA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 38.0 3.50e-01 81.5% 52.9%
2dt4A00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.56 42.0 3.54e-01 80.2% 57.3%
3es4A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 37.0 3.35e-01 81.5% 46.6%
3i3tA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 42.0 2.79e-01 79.0% 91.7%
2vpvA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 36.0 3.51e-01 81.5% 58.5%
2d93A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 43.0 3.61e-01 90.1% 50.0%
3es1A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 36.0 3.18e-01 81.5% 44.4%
4rr9A01 3.50.80.10 Alpha Beta › 3-Layer(bba) Sandwich › D-tyrosyl-trna(Tyr) Deacylase; Chain: A; › D-tyrosyl-tRNA(Tyr) deacylase 0.54 40.0 3.50e-01 81.5% 100.0%
2ozjA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 35.0 3.25e-01 81.5% 49.5%
1jb0D00 3.30.1470.10 Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II 0.53 40.0 3.39e-01 86.4% 47.8%
2q30A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 35.0 3.44e-01 80.2% 61.4%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.53 36.0 3.26e-01 70.4% 88.9%
6grrB01 3.30.457.10 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain 0.53 32.0 3.24e-01 70.4% 60.8%
4rd7A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 35.0 3.14e-01 81.5% 47.1%
4osnA00 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.52 38.0 3.50e-01 79.0% 98.2%
1pmiA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 38.0 2.92e-01 77.8% 47.6%
2f4pA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 42.0 3.58e-01 88.9% 84.3%
2bnmA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 36.0 3.18e-01 79.0% 49.2%
4mv2A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 34.0 3.06e-01 81.5% 46.7%
2opkB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 36.0 3.45e-01 82.7% 63.8%
1o5lA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 44.0 3.83e-01 98.8% 67.4%
5h5oA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 43.0 3.78e-01 96.3% 67.2%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3895159 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 52.0 5.97e-01 70.4% 100.0%
5039349 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 54.0 6.11e-01 72.8% 100.0%
3505111 4.1.1.318 ↗ beta barrels › SH3 › SH3 › SH3 › PF26085 0.73 52.0 4.97e-01 77.8% 64.5%
4091791 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 48.0 5.03e-01 74.1% 94.7%
2137275 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.67 45.0 5.13e-01 77.8% 96.6%
1320680 4.1.1.115 ↗ beta barrels › SH3 › SH3 › SH3 › LytB_SH3 0.64 47.0 5.13e-01 79.0% 97.0%
3716713 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.64 39.0 4.61e-01 77.8% 98.0%
4347828 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 45.0 4.79e-01 74.1% 91.4%
3530247 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 45.0 4.95e-01 79.0% 95.4%
4229837 4.1.1.354 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY, PF28930 0.63 54.0 4.22e-01 97.5% 47.6%
3554670 4.1.1.340 ↗ beta barrels › SH3 › SH3 › SH3 › PF28930 0.62 55.0 5.26e-01 100.0% 95.8%
3407377 4076.3.1.9 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PSF1_C 0.62 38.0 4.32e-01 77.8% 84.7%
4973337 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.62 39.0 4.57e-01 80.2% 94.5%
4935547 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.62 37.0 4.51e-01 77.8% 98.0%
4446467 4.1.1.278 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_YKFC_2nd 0.62 44.0 4.80e-01 76.5% 95.4%
3929096 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.61 37.0 4.37e-01 77.8% 98.0%
3610322 3529.1.1.1 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.59 39.0 4.39e-01 82.7% 93.3%
5019734 4076.3.1.5 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C 0.59 36.0 4.38e-01 76.5% 100.0%
3824643 10.12.1.21 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › ERG2_Sigma1R 0.58 39.0 2.93e-01 81.5% 26.7%
3514819 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.57 44.0 2.94e-01 88.9% 22.0%
3492162 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.56 43.0 3.50e-01 88.9% 44.0%
3494269 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.56 43.0 2.81e-01 88.9% 19.1%
3779679 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.56 43.0 2.87e-01 88.9% 21.0%
5013823 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.56 44.0 3.83e-01 87.7% 93.1%
3698096 219.1.1.115 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › AIM3_BBC1_C 0.55 40.0 3.21e-01 79.0% 46.7%
3969011 10.12.1.27 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_3 0.55 36.0 3.29e-01 80.2% 47.8%
3710560 10.12.1.97 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › CNBH_CNNM2_C 0.54 39.0 3.26e-01 81.5% 42.8%
3193939 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.54 36.0 2.97e-01 82.7% 35.0%
3593796 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.54 37.0 4.03e-01 70.4% 92.3%
4202768 4167.1.1.1 ↗ beta complex topology › Flagellar hook protein flgE D1 domain › Flagellar hook protein flgE D1 domain › Flagellar hook protein flgE D1 domain › LlgE_F_G_D1 0.54 44.0 3.58e-01 90.1% 97.4%
3215294 10.12.1.97 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › CNBH_CNNM2_C 0.54 41.0 3.24e-01 80.2% 45.5%
5039875 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.53 41.0 3.22e-01 82.7% 71.0%
3404684 10.12.1.84 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › VKGC_lumenal_dom 0.53 36.0 2.74e-01 80.2% 27.1%
3720434 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.53 36.0 2.82e-01 81.5% 30.8%
3504053 10.12.1.97 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › CNBH_CNNM2_C 0.53 40.0 3.16e-01 80.2% 52.9%
4236729 10.12.1.33 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Ectoine_synth 0.53 35.0 3.05e-01 81.5% 40.7%
4958822 865.1.1.1 ↗ beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain › B3_4 0.53 43.0 3.14e-01 90.1% 75.9%
3403797 10.12.1.97 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › CNBH_CNNM2_C 0.53 40.0 3.07e-01 81.5% 45.8%
5010244 865.1.1.1 ↗ beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain › B3_4 0.53 43.0 3.16e-01 90.1% 78.6%
1389760 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.52 35.0 3.14e-01 81.5% 47.1%
5040887 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 40.0 2.89e-01 82.7% 50.2%
4387276 10.12.1.85 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_6 0.52 44.0 3.46e-01 97.5% 77.8%
3198319 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.52 43.0 2.91e-01 95.1% 91.9%
4681454 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.51 35.0 2.80e-01 81.5% 32.8%
5077026 865.1.1.1 ↗ beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain › B3_4 0.51 42.0 3.04e-01 90.1% 76.8%
4284515 10.12.1.5 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PMI_typeI_C 0.51 35.0 3.28e-01 79.0% 56.0%
3970699 4167.1.1.0 ↗ beta complex topology › Flagellar hook protein flgE D1 domain › Flagellar hook protein flgE D1 domain › Flagellar hook protein flgE D1 domain 0.51 44.0 3.63e-01 100.0% 95.5%
5073275 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.51 34.0 3.21e-01 80.2% 54.3%
3734360 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 37.0 2.98e-01 82.7% 83.2%
3967237 10.12.1.85 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_6 0.50 43.0 3.38e-01 100.0% 54.7%
3257728 2004.1.1.417 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 0.50 41.0 2.98e-01 95.1% 86.8%
4567075 10.12.1.84 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › VKGC_lumenal_dom 0.50 34.0 2.41e-01 81.5% 20.4%