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OR258281.1__WNA16106.1__XaC1_467__00463
Bact-VirOR258281.1__WNA16106.1__XaC1_467__00463
Identity
- Accession:
- OR258281 ↗
- Kingdom:
- phage
Quality
81.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 20-75
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6mh4A03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.74 | 58.0 | 5.27e-01 | 96.4% | 62.0% |
| 2e62A01 | 6.10.140.420 | Special › Helix non-globular › Helix Hairpins › | 0.74 | 56.0 | 5.75e-01 | 83.9% | 88.5% |
| 6ynwH01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.74 | 56.0 | 5.14e-01 | 83.9% | 63.5% |
| 2wcjA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.71 | 58.0 | 4.34e-01 | 91.1% | 87.9% |
| 2g8lB01 | 1.10.8.380 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 | 0.70 | 56.0 | 5.34e-01 | 96.4% | 76.1% |
| 1j8yF01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.70 | 57.0 | 4.95e-01 | 91.1% | 96.5% |
| 2qgsB01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.69 | 56.0 | 4.88e-01 | 91.1% | 58.0% |
| 3if8B02 | 1.20.58.730 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.69 | 56.0 | 4.74e-01 | 94.6% | 60.0% |
| 3favD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.69 | 53.0 | 4.78e-01 | 83.9% | 74.4% |
| 6tkvA01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.66 | 50.0 | 4.69e-01 | 80.4% | 75.0% |
| 4ivfA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.66 | 47.0 | 3.67e-01 | 75.0% | 41.4% |
| 5l3wA01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.65 | 52.0 | 4.63e-01 | 92.9% | 60.7% |
| 2e5yA02 | 1.20.5.440 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain | 0.65 | 44.0 | 4.82e-01 | 71.4% | 88.9% |
| 2q0oC00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.65 | 49.0 | 4.26e-01 | 82.1% | 87.2% |
| 1td6A01 | 1.20.1480.10 | Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › hypothetical protein mp506/mpn330, domain 1 | 0.64 | 45.0 | 3.78e-01 | 75.0% | 75.5% |
| 4errB00 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 44.0 | 3.87e-01 | 71.4% | 98.8% |
| 2ktmA00 | 1.10.790.10 | Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain | 0.64 | 54.0 | 5.13e-01 | 98.2% | 80.9% |
| 2kw6A00 | 6.10.140.1300 | Special › Helix non-globular › Helix Hairpins › | 0.62 | 48.0 | 4.57e-01 | 82.1% | 72.3% |
| 3mhsB00 | 1.10.246.140 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › ENY2/SUS1 | 0.62 | 51.0 | 4.49e-01 | 98.2% | 97.8% |
| 2oxlA00 | 1.20.5.5260 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.61 | 43.0 | 4.17e-01 | 71.4% | 83.9% |
| 2xqyA01 | 3.30.500.50 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.60 | 50.0 | 3.57e-01 | 94.6% | 84.8% |
| 3h6pC00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.59 | 45.0 | 4.52e-01 | 83.9% | 85.7% |
| 4nb5B02 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.59 | 44.0 | 4.23e-01 | 80.4% | 73.4% |
| 2b5dX01 | 3.20.110.10 | Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain | 0.58 | 48.0 | 2.92e-01 | 94.6% | 83.9% |
| 1hr5A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.57 | 41.0 | 4.33e-01 | 76.8% | 87.5% |
| 1kfdA02 | 1.20.1060.10 | Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 | 0.57 | 43.0 | 3.98e-01 | 80.4% | 63.4% |
| 3kr9A02 | 1.10.287.1890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.56 | 44.0 | 4.28e-01 | 85.7% | 85.2% |
| 2rbdA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.54 | 47.0 | 3.49e-01 | 100.0% | 80.7% |
| 2gtsA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.53 | 41.0 | 3.71e-01 | 85.7% | 89.6% |
| 2b1eA01 | 1.20.58.1150 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 48.0 | 4.12e-01 | 100.0% | 70.9% |
| 1vmgA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.52 | 45.0 | 3.96e-01 | 96.4% | 81.7% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1877692 | 6026.1.1.1 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › cwf21 | 0.78 | 59.0 | 6.22e-01 | 82.1% | 97.9% |
| 4003051 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.76 | 61.0 | 5.83e-01 | 85.7% | 93.8% |
| 4011398 | 633.24.1.0 ↗ | alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain | 0.73 | 56.0 | 4.90e-01 | 83.9% | 56.5% |
| 3995291 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.73 | 51.0 | 4.90e-01 | 80.4% | 64.6% |
| 5038339 | 5058.1.1.2 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st | 0.72 | 58.0 | 5.08e-01 | 89.3% | 64.7% |
| 3993361 | 622.4.1.41 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › DUF7753 | 0.72 | 57.0 | 5.48e-01 | 89.3% | 87.7% |
| 3775067 | 198.1.1.21 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapA, SapB_2 | 0.69 | 49.0 | 3.82e-01 | 75.0% | 36.7% |
| 4014288 | 509.1.1.0 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain | 0.67 | 58.0 | 5.22e-01 | 98.2% | 70.0% |
| 3396076 | 198.1.1.2 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 | 0.67 | 49.0 | 4.60e-01 | 83.9% | 64.0% |
| 4106620 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.67 | 48.0 | 4.39e-01 | 76.8% | 81.3% |
| 3399070 | 4082.1.1.1 ↗ | alpha duplicates or obligate multimers › Hairy Orange domain › Hairy Orange domain › Hairy Orange domain › Hairy_orange | 0.65 | 46.0 | 4.67e-01 | 76.8% | 76.4% |
| 4244986 | 192.6.1.1 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › ATP-synt_DE | 0.65 | 44.0 | 4.87e-01 | 75.0% | 88.9% |
| 3404906 | 4044.1.1.0 ↗ | alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins | 0.65 | 57.0 | 4.72e-01 | 100.0% | 77.0% |
| 3846955 | 198.1.1.10 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2, SapB_1, Saposin | 0.64 | 47.0 | 4.34e-01 | 83.9% | 60.0% |
| 3488979 | 192.5.1.0 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat | 0.64 | 45.0 | 3.47e-01 | 75.0% | 35.2% |
| 3223457 | 101.1.2.661 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_9, POLR3C_WHD | 0.64 | 50.0 | 3.21e-01 | 87.5% | 78.6% |
| 3923696 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.63 | 46.0 | 4.08e-01 | 82.1% | 54.4% |
| 4957466 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.63 | 44.0 | 2.79e-01 | 75.0% | 13.3% |
| 3237264 | 3755.4.1.82 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Snf7 | 0.63 | 54.0 | 4.21e-01 | 100.0% | 46.2% |
| 3595968 | 605.2.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 | 0.63 | 48.0 | 4.27e-01 | 82.1% | 58.7% |
| 4652719 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.62 | 48.0 | 4.03e-01 | 83.9% | 64.2% |
| 3804522 | 1147.1.1.1 ↗ | alpha bundles › RNA polymerase II elongation factor ELL2 C-terminal domain › RNA polymerase II elongation factor ELL2 C-terminal domain › RNA polymerase II elongation factor ELL2 C-terminal domain › Occludin_ELL | 0.62 | 44.0 | 3.41e-01 | 75.0% | 62.5% |
| 3582573 | 192.24.1.0 ↗ | alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain | 0.62 | 47.0 | 3.75e-01 | 82.1% | 95.5% |
| 3930816 | 101.1.2.236 ↗ | alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD | 0.60 | 50.0 | 3.13e-01 | 89.3% | 93.8% |
| 3855461 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.60 | 47.0 | 4.04e-01 | 83.9% | 88.2% |
| 3556027 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.60 | 47.0 | 4.03e-01 | 83.9% | 88.2% |
| 3491418 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.60 | 47.0 | 4.22e-01 | 83.9% | 62.7% |
| 3552352 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.60 | 45.0 | 4.04e-01 | 83.9% | 58.8% |
| 3487862 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.57 | 49.0 | 3.28e-01 | 100.0% | 24.2% |
| 2323907 | 212.1.1.24 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Morc6_S5 | 0.57 | 48.0 | 3.27e-01 | 100.0% | 25.6% |
| 3797233 | 603.5.1.0 ↗ | alpha bundles › STAT-like › FlgN-like › FlgN-like | 0.56 | 42.0 | 2.96e-01 | 80.4% | 31.7% |
| 3215052 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.55 | 40.0 | 3.64e-01 | 83.9% | 62.4% |
| 3839497 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.55 | 43.0 | 3.69e-01 | 83.9% | 96.5% |
| 4038778 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.53 | 44.0 | 3.55e-01 | 94.6% | 94.8% |