Back to structures

OR258281.1__WNA16151.1__XaC1_516__00508

Bact-Vir

OR258281.1__WNA16151.1__XaC1_516__00508

Identity

Accession:
OR258281 ↗
Kingdom:
phage

Quality

86.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-78
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8ainB01 3.10.450.250 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › S. aureus uracil DNA glycosylase inhibitor 0.67 58.0 5.13e-01 98.6% 69.5%
1d6uA03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.65 58.0 3.58e-01 100.0% 37.3%
3v8uA04 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.65 46.0 3.68e-01 75.7% 44.0%
2obaA00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.63 47.0 3.96e-01 80.0% 99.2%
4x2oA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 55.0 4.13e-01 100.0% 84.9%
3esiA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.61 45.0 3.75e-01 78.6% 83.1%
2r5rA00 3.10.270.10 Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; 0.61 45.0 3.09e-01 78.6% 53.7%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 43.0 3.23e-01 75.7% 47.1%
4f0aB02 3.30.2460.20 Alpha Beta › 2-Layer Sandwich › Endo-n-acetylneuraminidase fold › Wnt (Wingless and Int-1), C-terminal domain 0.60 44.0 4.45e-01 75.7% 89.7%
1fhvA02 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.60 43.0 3.63e-01 77.1% 70.2%
1p1hB01 3.30.2360.10 Alpha Beta › 2-Layer Sandwich › Glyceraldehyde-3-phosphate dehydrogenase-like fold › Glyceraldehyde-3-phosphate dehydrogenase-like domain 0.60 44.0 3.28e-01 78.6% 61.4%
4cciA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 42.0 2.90e-01 75.7% 57.6%
2pmqA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.59 45.0 3.64e-01 81.4% 89.9%
3jyhA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 41.0 2.73e-01 77.1% 39.3%
2d73A01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.57 49.0 3.31e-01 100.0% 39.8%
2gexA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 46.0 3.72e-01 92.9% 76.0%
3f7xA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 41.0 3.41e-01 80.0% 70.7%
3w1hA01 3.90.1150.110 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.56 48.0 3.51e-01 95.7% 40.2%
3cfuA00 2.60.40.1240 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 40.0 3.21e-01 75.7% 66.7%
8gjaD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 47.0 3.23e-01 98.6% 82.6%
4qt6A00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.55 39.0 3.04e-01 75.7% 57.2%
3f9sB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 43.0 3.51e-01 87.1% 67.4%
2if7B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 43.0 3.96e-01 94.3% 66.7%
1atiB01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.55 48.0 3.15e-01 100.0% 35.7%
2k4nA00 3.30.720.70 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.54 45.0 3.93e-01 92.9% 58.6%
2i4lA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.54 46.0 2.95e-01 95.7% 79.1%
4pbpA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 38.0 2.78e-01 75.7% 42.7%
2jo6A00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.54 39.0 3.46e-01 100.0% 50.9%
3ialA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.54 44.0 3.02e-01 95.7% 76.9%
3n4fA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 43.0 3.54e-01 87.1% 79.5%
4jhmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 40.0 3.44e-01 82.9% 93.2%
3ub1A01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 42.0 3.34e-01 85.7% 62.5%
3ubfA03 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.53 46.0 4.02e-01 94.3% 70.6%
1v5mA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 37.0 3.01e-01 74.3% 45.6%
3kkgA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 3.32e-01 87.1% 61.1%
2amhA00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.51 44.0 3.26e-01 100.0% 53.8%
5bkaE01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 39.0 3.20e-01 84.3% 75.0%
1k8iB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 44.0 3.88e-01 94.3% 75.8%
5jowA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 36.0 2.68e-01 77.1% 47.0%
1ffyA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.51 40.0 2.58e-01 92.9% 38.5%
3bjsA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.50 37.0 3.20e-01 81.4% 94.0%
2zyrA02 2.60.40.2190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 44.0 4.02e-01 97.1% 86.2%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4889565 10.1.1.87 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY, RYDR_Jsol 0.69 51.0 3.43e-01 78.6% 41.9%
4959439 243.3.1.80 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PF30787 0.68 58.0 5.62e-01 98.6% 95.0%
3875597 77.3.1.0 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain 0.66 56.0 3.44e-01 91.4% 41.8%
4317099 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.66 47.0 3.61e-01 77.1% 69.4%
4811709 7579.1.1.44 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 0.64 48.0 3.45e-01 78.6% 68.6%
3957958 7579.1.1.0 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.64 46.0 3.70e-01 75.7% 84.6%
5019602 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.62 44.0 3.68e-01 74.3% 79.2%
3992062 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 45.0 3.14e-01 78.6% 72.0%
4847872 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.62 41.0 3.51e-01 71.4% 41.4%
3332191 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 43.0 3.09e-01 72.9% 46.5%
4951632 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 52.0 4.69e-01 100.0% 83.0%
4820866 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.60 43.0 3.75e-01 77.1% 49.5%
4451157 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.60 51.0 3.59e-01 97.1% 85.2%
3739406 330.1.1.9 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dcr1-like_dsRNA-bd_dom 0.59 48.0 4.16e-01 87.1% 67.6%
3693121 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.59 48.0 4.14e-01 91.4% 56.4%
3607433 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 53.0 3.20e-01 100.0% 18.7%
4159896 2003.1.1.59 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_5 0.59 43.0 2.68e-01 78.6% 84.0%
3714446 2004.1.1.162 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.59 48.0 3.14e-01 91.4% 98.7%
3945044 241.2.1.0 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.59 51.0 4.15e-01 100.0% 52.5%
3592295 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 49.0 3.84e-01 98.6% 83.7%
3472093 10.1.1.8 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY 0.57 41.0 2.96e-01 75.7% 56.0%
None 0.57 41.0 2.63e-01 78.6% 15.0%
3242737 5.1.5.47 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › BCAS3_WD40 0.57 49.0 2.93e-01 100.0% 27.8%
4682218 3382.1.1.1 alpha arrays › Protein Wnt-8 › Protein Wnt-8 › Protein Wnt-8 › wnt 0.56 38.0 2.48e-01 71.4% 16.2%
3432461 5.1.4.73 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RAB3GAP2_N 0.56 50.0 3.06e-01 100.0% 19.1%
3521942 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.56 41.0 3.27e-01 80.0% 98.7%
5077563 2004.1.1.293 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.56 40.0 2.57e-01 77.1% 17.0%
4811711 7579.1.1.0 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.56 48.0 3.47e-01 94.3% 68.4%
4014865 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.55 40.0 3.07e-01 75.7% 45.2%
3190947 2011.1.1.0 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases 0.55 48.0 3.05e-01 100.0% 73.5%
3972938 5085.1.1.1 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.55 40.0 2.43e-01 75.7% 56.8%
4975225 2011.1.1.11 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M42 0.55 48.0 3.15e-01 97.1% 92.7%
3764790 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 47.0 4.31e-01 100.0% 88.4%
3724449 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.55 39.0 3.63e-01 75.7% 67.8%
3943722 5085.1.1.1 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.55 39.0 2.41e-01 75.7% 55.3%
3785806 5.1.2.20 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › BMT 0.55 46.0 2.81e-01 100.0% 23.7%
3255418 2011.1.1.8 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.54 48.0 3.02e-01 100.0% 64.4%
3193145 2003.1.2.29 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8 0.54 45.0 2.82e-01 94.3% 46.8%
4484391 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.54 38.0 3.28e-01 77.1% 92.0%
3579353 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.54 38.0 3.19e-01 74.3% 64.2%
3797447 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.54 45.0 4.06e-01 91.4% 71.6%
1582440 218.1.1.0 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.54 43.0 3.66e-01 87.1% 89.4%
3690865 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 45.0 3.32e-01 94.3% 76.2%
4970894 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.53 43.0 3.23e-01 91.4% 92.1%
3689101 7579.1.1.23 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › PAF-AH_p_II 0.53 40.0 2.60e-01 82.9% 53.1%
3588488 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 45.0 4.15e-01 100.0% 91.6%
3190012 883.1.1.12 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › DUF5923 0.53 40.0 2.83e-01 81.4% 43.6%
3687632 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 44.0 3.33e-01 94.3% 78.3%
3230538 298.1.1.0 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.53 36.0 2.70e-01 72.9% 51.1%
3930986 4292.2.1.0 a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.52 44.0 3.90e-01 97.1% 63.8%
3503045 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.52 37.0 3.00e-01 75.7% 75.6%
3509891 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.52 43.0 2.81e-01 97.1% 86.4%
3828275 219.1.1.71 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PDDEXK_6 0.51 40.0 3.05e-01 87.1% 72.2%
3279994 7579.1.1.23 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › PAF-AH_p_II 0.51 40.0 2.63e-01 87.1% 51.5%
4965185 7099.1.1.1 a+b complex topology › VP5 N-terminal domain › VP5 N-terminal domain › VP5 N-terminal domain › Viral_env_HRPV 0.51 41.0 2.73e-01 97.1% 20.0%
4019547 319.1.1.8 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CactinC_cactus 0.51 41.0 3.46e-01 94.3% 53.0%
3600592 223.2.1.20 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 0.51 38.0 2.82e-01 80.0% 50.0%
5071965 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.50 43.0 3.95e-01 100.0% 83.2%
3704401 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.50 42.0 3.60e-01 94.3% 62.6%
4978195 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.50 44.0 3.27e-01 100.0% 82.2%