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OR260089.1__WNV48033.1__GB2A_gp001c__00001
Bact-VirOR260089.1__WNV48033.1__GB2A_gp001c__00001
Identity
- Accession:
- OR260089 ↗
- Kingdom:
- phage
Quality
83.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 22-134
Domain cluster:
rep: IMGVR_UViG_3300018424_003455-3300018424-Ga0181591_100264573__D15-109
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20901.4 best | Sf6_terminase | 50.8 | 2.30e-13 | 85.0% | 90.6% |
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4dyqA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.81 | 69.0 | 7.27e-01 | 92.9% | 99.0% |
| 3eabE00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.67 | 42.0 | 4.80e-01 | 70.8% | 83.7% |
| 1bgcA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.66 | 40.0 | 3.52e-01 | 77.0% | 43.0% |
| 3otnA00 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.66 | 47.0 | 3.05e-01 | 73.5% | 29.5% |
| 3bt5A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.65 | 46.0 | 4.14e-01 | 71.7% | 86.8% |
| 2yw6B00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.64 | 44.0 | 4.04e-01 | 71.7% | 85.3% |
| 2yjkC00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.63 | 44.0 | 3.93e-01 | 71.7% | 81.5% |
| 2rldA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.62 | 38.0 | 3.85e-01 | 70.8% | 59.6% |
| 4d8mA01 | 1.20.190.10 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain | 0.62 | 51.0 | 4.15e-01 | 89.4% | 90.3% |
| 2clbA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.62 | 44.0 | 3.86e-01 | 72.6% | 81.8% |
| 4a25B01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.62 | 43.0 | 3.84e-01 | 71.7% | 80.7% |
| 1ciyA01 | 1.20.190.10 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain | 0.61 | 52.0 | 4.19e-01 | 92.9% | 60.2% |
| 2c0uA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.61 | 43.0 | 3.78e-01 | 75.2% | 48.5% |
| 1dlcA01 | 1.20.190.10 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain | 0.61 | 51.0 | 4.11e-01 | 92.9% | 59.4% |
| 3rx6A00 | 1.20.58.1090 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phage polarity suppression protein monomer | 0.60 | 43.0 | 3.65e-01 | 74.3% | 82.4% |
| 2l81A00 | 1.20.120.830 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Serine-rich domain | 0.60 | 42.0 | 3.66e-01 | 72.6% | 50.0% |
| 4u7iA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.60 | 39.0 | 4.20e-01 | 71.7% | 78.5% |
| 2gsvA00 | 6.10.140.40 | Special › Helix non-globular › Helix Hairpins › | 0.60 | 30.0 | 3.80e-01 | 72.6% | 80.6% |
| 1s35A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 41.0 | 4.22e-01 | 70.8% | 78.2% |
| 2ynqB00 | 1.25.40.680 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain | 0.60 | 38.0 | 3.47e-01 | 78.8% | 48.3% |
| 1nigA00 | 1.20.1200.10 | Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like | 0.59 | 41.0 | 3.79e-01 | 71.7% | 80.1% |
| 6todA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.59 | 41.0 | 3.03e-01 | 71.7% | 66.4% |
| 1qsdA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 40.0 | 4.22e-01 | 70.8% | 92.2% |
| 2hujA00 | 1.20.120.440 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like | 0.58 | 39.0 | 3.79e-01 | 71.7% | 60.8% |
| 3nftA00 | 1.20.1710.10 | Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like | 0.58 | 42.0 | 3.21e-01 | 75.2% | 59.2% |
| 2v7kA02 | 1.20.58.480 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 46.0 | 3.79e-01 | 86.7% | 83.6% |
| 1xg2B00 | 1.20.140.40 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein | 0.57 | 42.0 | 3.78e-01 | 87.6% | 56.3% |
| 6lumD01 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.56 | 39.0 | 3.87e-01 | 73.5% | 71.2% |
| 3i5pA02 | 1.25.40.440 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Nucleoporin, helical domain, central subdomain | 0.56 | 31.0 | 3.91e-01 | 77.9% | 90.0% |
| 2j1dG01 | 1.20.58.2220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Formin, FH2 domain | 0.55 | 49.0 | 3.46e-01 | 100.0% | 68.5% |
| 5jrcA00 | 1.20.58.2140 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 44.0 | 3.74e-01 | 85.8% | 83.9% |
| 1rx0A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.55 | 38.0 | 3.42e-01 | 74.3% | 51.0% |
| 1siqA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.54 | 37.0 | 3.38e-01 | 74.3% | 51.0% |
| 2jqqA00 | 1.20.58.1240 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 44.0 | 4.02e-01 | 90.3% | 86.4% |
| 2b5uA02 | 1.10.287.620 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins | 0.51 | 44.0 | 3.89e-01 | 92.0% | 87.0% |
| 2rfqC03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.51 | 45.0 | 3.85e-01 | 94.7% | 80.0% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 383331 | 101.31.1.1 ↗ | alpha arrays › HTH › Bacteriophage Sf6 terminase small subunit › Bacteriophage Sf6 terminase small subunit › Sf6_terminase | 0.81 | 69.0 | 6.60e-01 | 92.9% | 78.5% |
| 4009811 | 101.31.1.1 ↗ | alpha arrays › HTH › Bacteriophage Sf6 terminase small subunit › Bacteriophage Sf6 terminase small subunit › Sf6_terminase | 0.79 | 68.0 | 7.09e-01 | 93.8% | 98.1% |
| 3721656 | 630.1.1.2 ↗ | a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › PF29521 | 0.66 | 49.0 | 4.59e-01 | 76.1% | 94.1% |
| 4241363 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.66 | 46.0 | 3.86e-01 | 71.7% | 58.4% |
| 5074225 | 604.5.1.0 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) | 0.65 | 43.0 | 4.71e-01 | 71.7% | 83.3% |
| 3215648 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.64 | 44.0 | 3.97e-01 | 70.8% | 59.4% |
| 3201044 | 7087.1.1.1 ↗ | alpha bundles › Emopamil binding protein (EBP) transmembrane domain › Emopamil binding protein (EBP) transmembrane domain › Emopamil binding protein (EBP) transmembrane domain › EBP | 0.64 | 45.0 | 4.00e-01 | 72.6% | 82.3% |
| 3215510 | 601.16.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase | 0.63 | 44.0 | 4.06e-01 | 71.7% | 63.6% |
| 3504305 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.62 | 43.0 | 4.49e-01 | 70.8% | 76.2% |
| 3770345 | 602.2.1.3 ↗ | alpha arrays › L-aspartase middle domain-like › RNA-binding protein She2p › RNA-binding protein She2p › PPP1R21_helical | 0.62 | 44.0 | 3.39e-01 | 72.6% | 39.6% |
| 3328086 | 3922.1.1.71 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Exo70_N | 0.62 | 43.0 | 4.17e-01 | 70.8% | 74.4% |
| 3710393 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.62 | 44.0 | 4.00e-01 | 73.5% | 68.7% |
| 3682306 | 633.23.1.32 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › CASP_dom | 0.61 | 43.0 | 3.79e-01 | 71.7% | 62.4% |
| 4214881 | 5001.1.1.9 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › TAS2R | 0.61 | 43.0 | 3.18e-01 | 73.5% | 45.5% |
| 3522929 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 51.0 | 3.90e-01 | 90.3% | 47.7% |
| 3717682 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 52.0 | 4.36e-01 | 94.7% | 72.5% |
| 4019940 | 603.1.1.1 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin | 0.61 | 50.0 | 4.08e-01 | 90.3% | 85.9% |
| 3501178 | 3755.4.1.31 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Fry_C | 0.61 | 42.0 | 3.46e-01 | 70.8% | 79.0% |
| 3801787 | 604.5.1.39 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PF26581 | 0.61 | 42.0 | 3.97e-01 | 70.8% | 79.3% |
| 3504303 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.60 | 42.0 | 4.42e-01 | 70.8% | 82.0% |
| 5040194 | 5069.1.3.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits | 0.60 | 40.0 | 4.24e-01 | 70.8% | 77.0% |
| 2530252 | 2500.1.1.3 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › PFL-like | 0.60 | 46.0 | 2.87e-01 | 83.2% | 29.4% |
| 3733697 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.60 | 51.0 | 3.39e-01 | 92.0% | 57.8% |
| 5027935 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.59 | 41.0 | 3.79e-01 | 70.8% | 73.8% |
| 3829651 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.59 | 45.0 | 3.40e-01 | 80.5% | 50.4% |
| 3262164 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.59 | 46.0 | 3.47e-01 | 81.4% | 59.6% |
| 3406198 | 1075.4.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold | 0.59 | 52.0 | 3.72e-01 | 99.1% | 86.1% |
| 3420847 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.59 | 48.0 | 4.23e-01 | 89.4% | 88.8% |
| 3582455 | 3843.1.1.0 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K | 0.59 | 33.0 | 3.80e-01 | 74.3% | 78.7% |
| 3255703 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.58 | 43.0 | 4.40e-01 | 76.1% | 89.0% |
| 3704394 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.58 | 51.0 | 3.88e-01 | 98.2% | 88.7% |
| 3940794 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.58 | 42.0 | 4.15e-01 | 75.2% | 98.3% |
| 4022273 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.58 | 41.0 | 3.77e-01 | 72.6% | 80.7% |
| 3381762 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.58 | 46.0 | 3.36e-01 | 84.1% | 70.8% |
| 4959990 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.57 | 44.0 | 4.21e-01 | 81.4% | 95.4% |
| 3595106 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 49.0 | 3.59e-01 | 95.6% | 44.0% |
| 3800295 | 109.4.1.1472 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tho2, Thoc2, THOC2_N | 0.57 | 49.0 | 2.97e-01 | 99.1% | 25.3% |
| 3257840 | 6155.1.1.2 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop | 0.57 | 46.0 | 4.05e-01 | 86.7% | 80.6% |
| 4027465 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 50.0 | 3.45e-01 | 99.1% | 48.6% |
| 4009690 | 7523.1.1.25 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Phosphonate-bd | 0.56 | 48.0 | 4.03e-01 | 93.8% | 93.8% |
| 3266577 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 47.0 | 3.12e-01 | 93.8% | 25.0% |
| 3185438 | 603.1.1.97 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin, SNARE | 0.56 | 44.0 | 3.70e-01 | 85.0% | 78.5% |
| 3403082 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 49.0 | 4.00e-01 | 97.3% | 88.7% |
| 3228159 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.54 | 37.0 | 3.43e-01 | 70.8% | 58.0% |
| 143026 | 109.10.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Translin › Translin › Translin | 0.54 | 43.0 | 3.42e-01 | 86.7% | 58.3% |
| 3516673 | 601.33.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › PPP1R21_helical | 0.54 | 48.0 | 4.25e-01 | 98.2% | 86.1% |
| 3875883 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.54 | 40.0 | 2.82e-01 | 77.9% | 52.8% |
| 3385727 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.53 | 37.0 | 2.83e-01 | 71.7% | 82.6% |
| 3614441 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.53 | 44.0 | 3.95e-01 | 90.3% | 90.6% |
| 3480118 | 109.4.1.276 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › EDC4_C | 0.53 | 44.0 | 4.03e-01 | 92.9% | 86.5% |
| 3693767 | 109.4.1.1320 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_7, TPR_10, TPR_12 | 0.51 | 45.0 | 3.34e-01 | 97.3% | 44.4% |