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OR260089.1__WNV48034.1__GB2A_gp002c__00002
Bact-VirOR260089.1__WNV48034.1__GB2A_gp002c__00002
Identity
- Accession:
- OR260089 ↗
- Kingdom:
- phage
Quality
69.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-83
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ltrA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.81 | 49.0 | 4.44e-01 | 77.5% | 46.7% |
| 7r97A02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.72 | 45.0 | 4.84e-01 | 71.2% | 75.0% |
| 1a9xA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.62 | 42.0 | 3.07e-01 | 70.0% | 77.0% |
| 2l6mA00 | 3.30.160.400 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.61 | 45.0 | 4.15e-01 | 81.2% | 61.4% |
| 4a18O00 | 3.30.390.110 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.59 | 48.0 | 4.01e-01 | 86.3% | 100.0% |
| 4e4tA03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.58 | 40.0 | 3.03e-01 | 72.5% | 82.7% |
| 7cm3A01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 49.0 | 3.85e-01 | 92.5% | 75.2% |
| 1ysqA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.57 | 42.0 | 3.32e-01 | 83.7% | 35.9% |
| 2x3aA01 | 2.60.40.2970 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 37.0 | 3.22e-01 | 71.2% | 82.0% |
| 2z17A00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.54 | 37.0 | 3.55e-01 | 71.2% | 74.5% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5035483 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.65 | 58.0 | 4.49e-01 | 97.5% | 49.4% |
| 4023242 | 220.1.1.187 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › VPS13_C | 0.63 | 34.0 | 2.96e-01 | 82.5% | 34.4% |
| 3660731 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.63 | 58.0 | 4.42e-01 | 100.0% | 72.6% |
| 3709299 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.63 | 44.0 | 2.72e-01 | 72.5% | 36.3% |
| 4403210 | 603.1.1.227 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Nop14 | 0.62 | 52.0 | 4.42e-01 | 90.0% | 67.2% |
| 3483174 | 5052.1.1.1 ↗ | alpha complex topology › Proton glutamate symport protein › Proton glutamate symport protein › Proton glutamate symport protein › SDF | 0.61 | 47.0 | 2.96e-01 | 83.7% | 97.3% |
| 3397508 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.61 | 55.0 | 4.18e-01 | 100.0% | 69.2% |
| 3606641 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.60 | 44.0 | 4.01e-01 | 77.5% | 60.0% |
| 5053759 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.59 | 49.0 | 4.15e-01 | 90.0% | 89.2% |
| 3213413 | 3937.1.1.2 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin | 0.58 | 49.0 | 3.11e-01 | 90.0% | 72.4% |
| 3878678 | 5050.1.1.31 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › SLC52_ribofla_tr | 0.56 | 49.0 | 3.51e-01 | 97.5% | 89.6% |
| 3616098 | 5057.1.1.0 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore | 0.55 | 40.0 | 3.28e-01 | 77.5% | 83.6% |
| 4099141 | 4967.1.1.6 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2 | 0.54 | 40.0 | 3.21e-01 | 78.8% | 77.4% |
| 3626813 | 5057.1.1.0 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore | 0.54 | 48.0 | 3.56e-01 | 97.5% | 49.5% |
| 3585180 | 109.4.1.1316 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Suf, HAT_PRP39_N, HAT_PRP39_C | 0.54 | 45.0 | 2.62e-01 | 88.7% | 11.8% |
| 3655957 | 7581.1.1.29 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › ACP_syn_III_C, ACP_syn_III | 0.52 | 40.0 | 2.63e-01 | 85.0% | 39.2% |
| 4474711 | 3747.1.1.2 ↗ | a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bb_rod,Flg_bbr_C | 0.51 | 47.0 | 4.24e-01 | 97.5% | 79.0% |
| None | — | 0.50 | 36.0 | 2.37e-01 | 77.5% | 18.3% |