←Back to structures

OR260089.1__WNV48094.1__GB2A_gp062c__00062

Bact-Vir

OR260089.1__WNV48094.1__GB2A_gp062c__00062

Identity

Accession:
OR260089 ↗
Kingdom:
phage

Quality

67.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Caulobacter_phage_GB2A

TaxID: 3075107

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 288-409
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bvlA01 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 46.0 5.31e-01 73.8% 97.7%
4d0nB01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.66 55.0 4.40e-01 89.3% 77.1%
1v9vA01 1.20.1480.20 Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › MAST3 pre-PK domain-like 0.66 48.0 5.33e-01 76.2% 100.0%
1foeA01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.66 55.0 4.65e-01 89.3% 93.0%
2fu2A00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.65 41.0 4.93e-01 74.6% 98.7%
7csoA01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.64 53.0 4.38e-01 89.3% 80.0%
1yo7A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.64 50.0 5.11e-01 83.6% 95.0%
1u89A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.64 50.0 4.80e-01 82.8% 88.5%
3l39A01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.64 50.0 4.27e-01 83.6% 66.0%
2z0qA01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.64 52.0 4.50e-01 89.3% 85.0%
1dkxA02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.63 39.0 4.61e-01 72.1% 95.0%
1r0dA00 1.20.1410.10 Mainly Alpha › Up-down Bundle › I/LWEQ domain › I/LWEQ domain 0.62 49.0 4.21e-01 83.6% 69.9%
4yonA01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.61 51.0 4.26e-01 90.2% 86.1%
4etrB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.61 42.0 4.24e-01 82.8% 70.5%
2dfkC01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.60 49.0 4.14e-01 89.3% 84.4%
1ki1B01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.60 49.0 4.26e-01 91.0% 91.0%
6ks6q01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.59 49.0 3.80e-01 89.3% 60.8%
3kavA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.59 46.0 4.90e-01 82.8% 100.0%
5af7B03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.59 48.0 4.52e-01 86.9% 89.9%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.59 45.0 4.69e-01 83.6% 97.4%
5cy5B00 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.58 46.0 4.38e-01 85.2% 80.5%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.58 34.0 3.92e-01 88.5% 78.0%
5hb0D01 1.20.120.1880 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleoporin, helical C-terminal domain 0.58 40.0 3.19e-01 70.5% 51.0%
2r6tB01 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.58 46.0 4.16e-01 85.2% 75.3%
4gyvE00 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.58 47.0 4.00e-01 91.0% 87.0%
3lmfA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.57 45.0 4.69e-01 83.6% 95.4%
2nq2A00 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.57 40.0 3.03e-01 73.0% 61.0%
1t6jA03 1.10.274.20 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 0.57 41.0 4.38e-01 74.6% 88.3%
2e87A01 1.20.120.1190 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.55 40.0 3.66e-01 75.4% 90.0%
4iloA00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 35.0 2.77e-01 83.6% 33.9%
3qhbA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.54 43.0 3.85e-01 85.2% 70.9%
3m6jA01 1.20.1260.40 Mainly Alpha › Up-down Bundle › Ferritin › 0.54 41.0 4.27e-01 80.3% 83.8%
3mpxA01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.54 46.0 3.91e-01 94.3% 94.2%
2vvwA00 1.10.437.20 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus 0.54 43.0 4.04e-01 84.4% 88.0%
1or4B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 48.0 4.43e-01 100.0% 82.3%
2w31A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 47.0 4.45e-01 100.0% 85.5%
7qocA01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.51 39.0 3.44e-01 81.1% 89.3%
3pmcA00 1.10.490.70 Mainly Alpha › Orthogonal Bundle › Globin-like › Histidine kinase N-terminal domain 0.51 43.0 4.26e-01 94.3% 89.4%
2gfhA02 1.20.120.710 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain 0.51 35.0 4.04e-01 76.2% 100.0%
2c42A06 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.50 42.0 2.96e-01 90.2% 40.5%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3266845 633.16.1.0 ↗ alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like 0.74 54.0 5.10e-01 76.2% 71.0%
3596222 3930.2.1.0 ↗ alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in endoribonuclease Dicer › Helical bundle in endoribonuclease Dicer 0.68 48.0 5.19e-01 73.0% 100.0%
3431182 604.3.1.0 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.67 50.0 4.71e-01 77.9% 69.0%
3714082 3567.1.1.0 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.67 49.0 3.92e-01 77.0% 96.2%
3940171 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.66 52.0 4.96e-01 82.0% 94.3%
3683769 206.1.1.70 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.66 49.0 3.35e-01 78.7% 23.4%
3285241 192.29.1.52 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Anthrone_oxy 0.66 48.0 4.30e-01 74.6% 77.6%
4110242 629.1.1.1 ↗ alpha bundles › TorD-like (Pfam 06192) › TorD-like (Pfam 06192) › TorD-like (Pfam 06192) › Nitrate_red_del 0.66 49.0 4.11e-01 77.9% 96.6%
3995514 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.65 50.0 4.78e-01 82.0% 87.6%
4945565 604.5.1.1 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU_div 0.65 50.0 4.22e-01 82.0% 63.3%
3537965 133.1.1.1 ↗ alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF 0.65 55.0 4.50e-01 91.0% 86.4%
4982026 150.1.1.209 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › DUF7121 0.64 50.0 4.82e-01 83.6% 84.3%
3177931 133.1.1.1 ↗ alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF 0.64 53.0 4.35e-01 91.0% 80.9%
3478235 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.64 50.0 5.00e-01 84.4% 93.0%
5043501 159.1.2.0 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related 0.63 52.0 4.35e-01 88.5% 60.5%
3741482 133.1.1.1 ↗ alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF 0.63 53.0 4.33e-01 91.8% 81.7%
3259226 3758.1.1.0 ↗ alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins 0.63 47.0 4.03e-01 79.5% 70.4%
3255161 133.1.1.1 ↗ alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF 0.61 51.0 4.36e-01 91.0% 90.0%
1503718 604.21.1.1 ↗ alpha bundles › Spectrin repeat-like › T4SS protein CagL › T4SS protein CagL › CagL 0.61 46.0 4.00e-01 79.5% 89.5%
1177227 133.1.1.1 ↗ alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF 0.61 51.0 4.10e-01 91.8% 73.9%
3254483 3758.1.1.0 ↗ alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins 0.61 45.0 3.67e-01 78.7% 56.4%
3263402 133.1.1.1 ↗ alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF 0.60 50.0 4.22e-01 90.2% 85.2%
3523264 633.23.1.22 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL 0.60 48.0 4.74e-01 85.2% 94.6%
4026634 5067.1.1.0 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain 0.60 45.0 3.98e-01 79.5% 61.6%
3276862 3758.1.1.0 ↗ alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins 0.60 45.0 3.74e-01 78.7% 60.9%
3875003 133.1.1.1 ↗ alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF 0.60 49.0 4.13e-01 91.0% 78.6%
3864123 633.21.1.10 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › MARVEL 0.60 47.0 4.67e-01 84.4% 95.4%
4611702 1175.1.1.1 ↗ alpha complex topology › Apolipoprotein N-acyltransferase transmembrane domain › Apolipoprotein N-acyltransferase transmembrane domain › Apolipoprotein N-acyltransferase transmembrane domain › LNT_N 0.60 49.0 3.94e-01 88.5% 66.3%
3770817 601.1.2.47 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › MARVEL 0.60 47.0 4.68e-01 85.2% 94.6%
3248399 3921.1.1.7 ↗ alpha complex topology › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D › ALMT 0.59 48.0 3.60e-01 86.9% 86.3%
3212207 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.59 46.0 4.54e-01 84.4% 88.1%
3874130 133.1.1.5 ↗ alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › DH_Alsin 0.59 49.0 4.20e-01 91.8% 93.8%
3214391 633.21.1.0 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.59 45.0 4.50e-01 81.1% 100.0%
3897844 133.1.1.1 ↗ alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF 0.59 49.0 4.04e-01 91.0% 80.4%
3512539 133.1.1.1 ↗ alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF 0.59 45.0 3.82e-01 82.8% 81.9%
4541208 3758.2.1.1 ↗ alpha bundles › Bacterial hemolysins-like › Biopolymer transport protein ExbB › Biopolymer transport protein ExbB › MotA_ExbB 0.59 43.0 3.39e-01 76.2% 78.8%
4958742 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.58 42.0 4.17e-01 74.6% 90.4%
3643402 592.1.1.0 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain 0.58 45.0 4.29e-01 82.0% 71.4%
4621811 1175.1.1.1 ↗ alpha complex topology › Apolipoprotein N-acyltransferase transmembrane domain › Apolipoprotein N-acyltransferase transmembrane domain › Apolipoprotein N-acyltransferase transmembrane domain › LNT_N 0.57 46.0 3.73e-01 87.7% 69.6%
3291693 150.1.2.13 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › Haem_oxygenas_2 0.57 48.0 3.94e-01 91.8% 88.3%
4012043 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.57 42.0 3.47e-01 77.9% 74.9%
3488829 2005.1.1.12 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1e 0.57 44.0 3.10e-01 99.2% 26.8%
3411249 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.57 46.0 4.54e-01 86.9% 87.7%
4674738 133.1.1.0 ↗ alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) 0.57 48.0 4.04e-01 94.3% 89.5%
3272245 4121.1.1.1 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.56 43.0 3.30e-01 79.5% 54.8%
4671784 3755.3.1.310 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › CemA 0.56 35.0 3.57e-01 92.6% 62.5%
3990193 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 46.0 3.98e-01 89.3% 84.1%
4636132 133.1.1.1 ↗ alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF 0.55 45.0 3.59e-01 89.3% 68.8%
3271077 133.1.1.1 ↗ alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF 0.55 43.0 3.66e-01 84.4% 69.0%
3270967 633.6.1.2 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › ACOX 0.54 43.0 4.10e-01 83.6% 72.1%
4007580 3755.3.1.15 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › MscS_porin 0.54 38.0 3.05e-01 71.3% 74.2%
3070398 3758.2.1.1 ↗ alpha bundles › Bacterial hemolysins-like › Biopolymer transport protein ExbB › Biopolymer transport protein ExbB › MotA_ExbB 0.53 39.0 3.16e-01 77.9% 81.3%
3234447 5001.1.1.34 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srb 0.51 42.0 3.22e-01 90.2% 87.4%
4276444 109.4.1.3238 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HopW1-1 0.51 42.0 3.18e-01 86.9% 78.5%
D2 high residues 603-714
PDB
Domain cluster: rep: MZ326863.1__QYW02339.1__CPT_Paku_045__00045__D5-122
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01464.26 best SLT 62.6 3.60e-17 86.6% 74.4%