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OR260090.1__WNV48186.1__Ql52_gp050__00050

Bact-Vir

OR260090.1__WNV48186.1__Ql52_gp050__00050

Identity

Accession:
OR260090 ↗
Kingdom:
phage

Quality

91.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autonotataviridae› Lullwatervirus› Caulobacter_phage_Quill_5.2

TaxID: 3075108

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 9-72
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5z9tA01 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.76 68.0 3.99e-01 100.0% 19.1%
5gkqB01 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.74 64.0 3.96e-01 100.0% 20.1%
4hwvB00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.71 61.0 3.67e-01 100.0% 24.8%
2f3lA00 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.70 53.0 4.17e-01 100.0% 39.4%
5jlvC00 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.68 52.0 4.53e-01 100.0% 53.6%
3zppA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.68 59.0 3.62e-01 100.0% 22.1%
3riqA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.68 58.0 3.44e-01 100.0% 14.6%
4mxnB00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.67 57.0 3.95e-01 100.0% 27.9%
1k5cA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.65 55.0 3.53e-01 96.9% 19.5%
2j8kA01 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.64 47.0 3.53e-01 100.0% 30.1%
5vlcA01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.63 49.0 3.76e-01 87.5% 46.2%
6kbiA01 3.80.20.20 Alpha Beta › Alpha-Beta Horseshoe › 24 nucleotide stem-loop, u2 snrnp hairpin iv. U2 a'; Chain A › Receptor L-domain 0.60 50.0 4.05e-01 100.0% 52.9%
3g23A02 3.50.30.60 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › LD-carboxypeptidase A C-terminal domain-like 0.54 43.0 3.82e-01 95.3% 81.0%
7zvjA01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.54 42.0 2.90e-01 85.9% 24.5%
1gymA00 3.20.20.190 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase 0.54 41.0 2.76e-01 87.5% 28.7%
7e52A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 44.0 3.58e-01 93.8% 52.3%
5t3oA02 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 44.0 3.58e-01 100.0% 49.6%
4gicA02 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.53 44.0 3.11e-01 100.0% 41.5%
1sqsA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.51 41.0 3.01e-01 100.0% 59.7%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2512645 207.2.1.24 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Chondroitinas_B 0.74 64.0 3.82e-01 100.0% 18.2%
3374610 207.2.1.3 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_4 0.73 64.0 4.37e-01 100.0% 31.6%
3400664 207.2.1.70 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD, Beta_helix 0.73 62.0 4.27e-01 100.0% 27.0%
5047146 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.73 60.0 4.36e-01 100.0% 32.4%
2547953 207.2.1.33 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pel9A-like_beta_helix 0.73 63.0 4.08e-01 100.0% 25.8%
3923083 207.2.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.72 62.0 4.30e-01 100.0% 28.2%
3388011 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.72 60.0 3.87e-01 96.9% 22.5%
4937812 207.8.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD 0.70 65.0 3.96e-01 100.0% 26.2%
5033010 207.2.1.13 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.70 59.0 3.70e-01 100.0% 16.8%
2010241 207.2.1.24 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Chondroitinas_B 0.69 59.0 3.61e-01 100.0% 16.4%
5072865 207.2.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.69 60.0 4.06e-01 100.0% 26.1%
3575994 207.9.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.67 50.0 4.82e-01 100.0% 69.3%
3629898 207.6.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C 0.67 54.0 5.25e-01 95.3% 79.5%
4929387 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.66 45.0 4.44e-01 98.4% 65.7%
4101649 207.11.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD 0.65 57.0 3.75e-01 96.9% 28.5%
2410150 207.10.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Arctic yeast antifreeze protein › Arctic yeast antifreeze protein › Ice_binding 0.65 54.0 3.72e-01 98.4% 25.4%
3715374 207.14.1.2 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › DGF-1_beta-sheet 0.65 55.0 4.71e-01 95.3% 59.0%
4634184 207.8.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD 0.65 56.0 3.60e-01 96.9% 35.6%
3650986 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.65 55.0 3.56e-01 96.9% 25.8%
4069065 207.9.1.4 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Involucrin 0.64 48.0 3.74e-01 100.0% 35.3%
3598843 207.9.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.63 48.0 3.52e-01 100.0% 29.2%
3482918 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.63 53.0 3.36e-01 100.0% 24.8%
3870521 207.14.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.58 47.0 4.57e-01 95.3% 97.3%
5006685 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.54 46.0 3.65e-01 98.4% 45.0%
4965633 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.53 44.0 3.98e-01 98.4% 66.3%
D2 medium residues 73-127
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3q41B02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 47.0 3.39e-01 92.7% 33.5%
2eo6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 44.0 3.65e-01 96.4% 88.0%
1ujrA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.54 40.0 3.58e-01 83.6% 59.0%
5gj7A02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.50 36.0 3.20e-01 83.6% 92.6%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3729936 1.1.9.27 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF7029 0.58 46.0 3.84e-01 89.1% 85.0%
3408176 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.53 36.0 2.82e-01 70.9% 96.7%
3957673 7528.1.1.1 ↗ a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › PGM_PMM_I 0.51 40.0 2.80e-01 90.9% 46.0%