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OR263580.1__WNA15357.1__SAMYPH_26__00026

Bact-Vir

OR263580.1__WNA15357.1__SAMYPH_26__00026

Identity

Accession:
OR263580 ↗
Kingdom:
phage

Quality

89.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptomyces_phage_Samy

TaxID: 3059248

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-184
PDB
Domain cluster: rep: AY320035.2__AAR29740.1__X__00053__D10-177
D2 high residues 205-280
PDB
Domain cluster: rep: NC_048686.1__YP_009836121.1__HWB41_gp02__00002__D179-248
D3 high residues 299-391
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01471.24 best PG_binding_1 27.8 3.30e-06 66.7% 96.5%
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4c2dA02 1.10.101.10 Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD 0.87 65.0 6.86e-01 96.8% 85.9%
1eakA01 1.10.101.10 Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD 0.82 50.0 5.91e-01 95.7% 90.5%
3bkhA01 1.10.101.10 Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD 0.81 62.0 6.49e-01 96.8% 87.2%
1lbuA01 1.10.101.10 Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD 0.80 64.0 6.69e-01 97.8% 92.9%
3k1rB00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.58 30.0 3.28e-01 84.9% 58.1%
3hibA01 1.10.3380.10 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain 0.53 35.0 3.23e-01 73.1% 50.8%
3di2A00 1.20.1250.50 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.52 37.0 3.46e-01 73.1% 90.4%
1qsaA03 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.52 45.0 3.72e-01 96.8% 64.2%
1aorA03 1.10.599.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 3 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 3 0.52 39.0 3.09e-01 81.7% 67.6%
6nhiA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.52 41.0 2.84e-01 87.1% 31.6%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3263339 144.1.1.1 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.86 66.0 7.38e-01 93.5% 100.0%
3201809 144.1.1.0 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like 0.85 70.0 7.56e-01 98.9% 100.0%
3319740 144.1.1.1 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.85 66.0 6.94e-01 95.7% 89.4%
1877329 144.1.1.1 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.85 56.0 6.19e-01 90.3% 82.9%
3356981 144.1.1.1 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.84 63.0 6.78e-01 93.5% 91.3%
4173379 144.1.1.1 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.81 63.0 6.72e-01 96.8% 93.8%
3590520 144.1.1.1 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.80 65.0 6.99e-01 94.6% 100.0%
3302194 144.1.1.1 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.80 66.0 6.63e-01 95.7% 86.3%
3060287 144.1.1.0 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like 0.80 55.0 6.05e-01 95.7% 88.0%
5019285 144.1.1.1 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.77 67.0 6.70e-01 97.8% 89.5%
3275963 144.1.1.1 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.77 66.0 6.71e-01 96.8% 93.3%
1904136 144.1.1.0 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like 0.74 52.0 5.65e-01 86.0% 89.3%
3274761 144.1.1.1 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.71 65.0 5.22e-01 95.7% 79.4%
3579672 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.60 36.0 4.40e-01 96.8% 100.0%
3282529 632.1.1.3 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Alpha-mann_mid 0.54 40.0 3.85e-01 77.4% 93.3%
3723754 632.1.1.3 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Alpha-mann_mid 0.53 39.0 3.72e-01 78.5% 91.3%
3724773 5059.1.1.4 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Nuc_sug_transp 0.51 38.0 2.64e-01 79.6% 62.4%