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OR263580.1__WNA15382.1__SAMYPH_51__00051

Bact-Vir

OR263580.1__WNA15382.1__SAMYPH_51__00051

Identity

Accession:
OR263580 ↗
Kingdom:
phage

Quality

87.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptomyces_phage_Samy

TaxID: 3059248

Cluster

View cluster (36 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-85
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 59.0 6.18e-01 98.5% 87.1%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.71 63.0 5.14e-01 100.0% 59.1%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 64.0 5.28e-01 100.0% 70.9%
2vgmA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.70 62.0 5.10e-01 100.0% 57.4%
1v29B02 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.70 62.0 5.50e-01 98.5% 85.6%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.68 55.0 4.28e-01 98.5% 40.4%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.67 48.0 3.98e-01 88.2% 43.0%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 45.0 4.52e-01 91.2% 67.6%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.65 50.0 4.88e-01 98.5% 76.0%
3k7uC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 51.0 4.53e-01 85.3% 96.9%
1m4zA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.64 58.0 4.14e-01 100.0% 50.5%
2crvA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.64 48.0 4.35e-01 79.4% 94.6%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.64 46.0 4.85e-01 100.0% 89.8%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 47.0 4.76e-01 98.5% 79.7%
2i4kA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.62 45.0 3.70e-01 77.9% 80.5%
3k59A01 2.40.50.590 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › DNA polymerase B, N domain, beta-barrel 0.61 51.0 4.69e-01 89.7% 94.1%
2epbA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 46.0 4.67e-01 86.8% 83.8%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.61 45.0 3.74e-01 77.9% 75.0%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.60 44.0 3.62e-01 77.9% 74.0%
6toaE01 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.60 44.0 3.94e-01 79.4% 100.0%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.59 45.0 4.41e-01 100.0% 74.0%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 41.0 3.86e-01 91.2% 60.5%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 48.0 4.27e-01 95.6% 89.3%
1v2bB00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.58 42.0 3.31e-01 79.4% 66.9%
3kf8A00 2.40.50.1040 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 44.0 3.23e-01 89.7% 53.1%
1jkgA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 44.0 3.65e-01 91.2% 79.9%
3fppA01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.56 45.0 4.02e-01 98.5% 60.6%
2mdrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 42.0 3.81e-01 82.4% 61.7%
2in5A00 2.40.360.10 Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like 0.55 42.0 3.15e-01 86.8% 53.8%
1jkfA03 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 35.0 3.67e-01 88.2% 73.3%
1wqsA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 44.0 3.88e-01 89.7% 89.3%
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.53 46.0 3.77e-01 100.0% 72.9%
1k5dB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 44.0 3.55e-01 98.5% 51.4%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 43.0 3.80e-01 97.1% 69.1%
3cnxA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 3.40e-01 91.2% 85.5%
7vljA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.52 40.0 3.69e-01 86.8% 100.0%
3omlA03 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 40.0 2.76e-01 86.8% 72.2%
2r4iA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 3.48e-01 91.2% 82.9%
7pkwA01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 42.0 3.72e-01 92.6% 81.6%
2b1xB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 40.0 3.12e-01 91.2% 79.0%
4e5xG00 2.60.40.3530 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 35.0 3.12e-01 73.5% 65.7%
2chcC00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 40.0 3.14e-01 91.2% 67.9%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3934278 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 67.0 5.51e-01 98.5% 52.2%
3645842 4.1.1.162 ↗ beta barrels › SH3 › SH3 › SH3 › DUF502 0.79 67.0 6.37e-01 100.0% 77.5%
3272197 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 69.0 5.96e-01 98.5% 62.9%
3676628 4.1.1.162 ↗ beta barrels › SH3 › SH3 › SH3 › DUF502 0.78 66.0 5.38e-01 100.0% 51.7%
3495713 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 69.0 4.86e-01 100.0% 46.0%
3304525 4.1.1.173 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4216 0.76 69.0 5.84e-01 100.0% 82.7%
3429465 4.1.1.173 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4216 0.75 69.0 5.16e-01 100.0% 54.2%
3584109 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 68.0 5.24e-01 100.0% 66.7%
3750522 4.1.1.218 ↗ beta barrels › SH3 › SH3 › SH3 › PWP3A-B_N 0.73 68.0 5.70e-01 100.0% 88.2%
3867207 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.73 61.0 5.38e-01 98.5% 64.2%
3650798 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 64.0 5.33e-01 100.0% 86.1%
3371134 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 64.0 5.22e-01 100.0% 84.2%
3974490 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 57.0 5.44e-01 100.0% 76.2%
5012425 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.69 63.0 4.91e-01 100.0% 56.4%
4983074 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.68 59.0 4.84e-01 100.0% 61.5%
5048974 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 55.0 4.72e-01 100.0% 55.5%
3219409 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 59.0 5.36e-01 95.6% 81.1%
3719860 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 58.0 4.87e-01 100.0% 56.5%
3297966 4.25.1.2 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.66 58.0 4.88e-01 100.0% 85.8%
3188394 4.8.1.22 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.66 60.0 4.92e-01 98.5% 65.0%
4400596 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.66 58.0 4.39e-01 100.0% 41.2%
3283097 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.66 57.0 4.80e-01 100.0% 58.2%
3449744 4.25.1.0 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.66 53.0 4.84e-01 86.8% 92.2%
4586503 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.63 46.0 3.61e-01 76.5% 78.5%
3702518 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 50.0 4.21e-01 85.3% 100.0%
3429751 708.1.1.2 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › WRKY 0.62 42.0 4.45e-01 86.8% 80.0%
4525110 1.1.13.65 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Mycop_pep_DUF31 0.60 46.0 3.67e-01 83.8% 91.4%
4997059 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.59 46.0 4.51e-01 98.5% 81.3%
3196896 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 40.0 2.58e-01 70.6% 14.8%
3958247 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 43.0 3.03e-01 80.9% 26.5%
4940587 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 46.0 3.99e-01 89.7% 83.6%
4954092 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.58 49.0 4.29e-01 95.6% 94.3%
4646070 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 45.0 3.89e-01 89.7% 54.5%
3640328 4.1.1.411 ↗ beta barrels › SH3 › SH3 › SH3 › Pkinase_fungal 0.57 41.0 4.09e-01 88.2% 77.1%
3400775 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.57 44.0 3.68e-01 86.8% 83.2%
5014316 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 45.0 3.38e-01 92.6% 36.3%
4940586 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 45.0 3.80e-01 89.7% 50.8%
5046429 7579.1.1.27 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › AXE1 0.56 40.0 2.64e-01 76.5% 45.7%
5031038 1.1.1.18 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 0.56 40.0 3.43e-01 79.4% 78.4%
3281481 222.1.1.34 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › AvrD 0.56 45.0 3.43e-01 89.7% 73.2%
5008070 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 46.0 3.85e-01 95.6% 76.0%
4141852 1.1.13.56 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › YQBQ 0.54 42.0 3.94e-01 86.8% 100.0%
4033933 9.9.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB › DUF1934 0.54 39.0 3.35e-01 86.8% 46.1%
3484705 220.1.1.61 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C_FAK1 0.53 45.0 3.62e-01 95.6% 62.9%
3559952 71.2.1.4 ↗ beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › CATIP_N 0.53 42.0 2.97e-01 91.2% 92.5%
4945115 4252.1.1.10 ↗ beta barrels › AttH-like › AttH-like › AttH-like › DUF2804 0.53 40.0 3.43e-01 89.7% 52.3%
4454427 220.1.1.9 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Voldacs 0.52 43.0 3.29e-01 98.5% 54.6%
4030120 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 43.0 2.67e-01 98.5% 16.0%
3473111 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.52 43.0 2.66e-01 97.1% 18.4%
3892200 71.2.1.4 ↗ beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › CATIP_N 0.52 41.0 2.93e-01 91.2% 92.3%
3720671 222.1.1.27 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PF27832 0.52 42.0 3.13e-01 89.7% 90.0%
3607882 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 43.0 3.77e-01 98.5% 69.1%
4985735 2.1.1.17 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.51 40.0 3.63e-01 88.2% 85.3%
3225768 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.51 41.0 3.21e-01 95.6% 60.0%
3388283 7503.1.1.0 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain 0.50 42.0 3.27e-01 94.1% 81.9%
4013582 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.50 39.0 3.18e-01 89.7% 66.9%
3972298 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.50 40.0 3.16e-01 88.2% 88.7%
4936151 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.50 41.0 3.15e-01 91.2% 40.0%