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OR263580.1__WNA15402.1__SAMYPH_71__00071

Bact-Vir

OR263580.1__WNA15402.1__SAMYPH_71__00071

Identity

Accession:
OR263580 ↗
Kingdom:
phage

Quality

72.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-56
PDB
Domain cluster: representative
CATH (70)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.81 57.0 5.29e-01 73.1% 68.3%
2gu3A01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.78 55.0 5.11e-01 75.0% 66.2%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.76 64.0 4.70e-01 100.0% 36.0%
3u97A00 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.75 56.0 4.92e-01 80.8% 58.4%
3n54B01 6.20.190.10 Special › Other non-globular › Nuclear Transport Factor 2; Chain: A, › Nutrient germinant receptor protein C, domain 1 0.74 57.0 5.40e-01 82.7% 86.9%
2b4wA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.74 63.0 3.94e-01 96.2% 31.6%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.73 64.0 4.00e-01 100.0% 29.5%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.73 51.0 4.23e-01 73.1% 46.7%
4nvrA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.71 52.0 3.23e-01 78.8% 25.8%
7c38B01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.71 62.0 3.83e-01 100.0% 29.4%
3f7wA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.71 49.0 4.10e-01 73.1% 78.0%
4agiA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.71 62.0 3.82e-01 100.0% 31.2%
4pj2A00 2.40.128.460 Mainly Beta › Beta Barrel › Lipocalin › Periplasmic lysozyme inhibitor of I-type lysozyme 0.71 62.0 4.72e-01 100.0% 91.7%
3i8tA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.70 60.0 4.40e-01 96.2% 53.6%
4k3yC00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.70 61.0 3.70e-01 100.0% 43.4%
4l68A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.70 47.0 3.75e-01 71.2% 65.5%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.69 60.0 3.73e-01 100.0% 34.9%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.69 57.0 4.29e-01 96.2% 56.9%
1jv2B04 4.10.1240.30 Few Secondary Structures › Irregular › Hormone receptor fold › 0.68 49.0 4.16e-01 76.9% 95.3%
4fdtB00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.68 48.0 2.87e-01 75.0% 89.1%
4dsdA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.68 48.0 3.61e-01 75.0% 45.2%
1mmuA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.67 48.0 2.92e-01 82.7% 11.8%
2m7oA00 3.10.450.400 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651 0.66 48.0 4.41e-01 80.8% 58.6%
2nrhB02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.66 51.0 3.69e-01 82.7% 66.0%
1sgoA01 3.30.2280.10 Alpha Beta › 2-Layer Sandwich › copper amine oxidase-like fold › Hypothetical protein (hspc210) 0.65 48.0 3.84e-01 82.7% 38.9%
2m4lA00 2.40.128.360 Mainly Beta › Beta Barrel › Lipocalin › 0.64 55.0 4.49e-01 98.1% 63.6%
1t6cA02 3.30.420.150 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 0.64 52.0 3.56e-01 90.4% 81.8%
3gvzA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.64 53.0 3.47e-01 98.1% 47.3%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.63 53.0 3.72e-01 100.0% 79.7%
4gyiA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 50.0 4.04e-01 88.5% 95.9%
3pcrA01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.61 50.0 4.14e-01 96.2% 50.0%
5xd6B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 42.0 3.56e-01 73.1% 83.0%
4rbnA01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 48.0 3.64e-01 86.5% 48.1%
8aimG01 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.61 46.0 4.04e-01 82.7% 70.4%
2o62A02 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 52.0 3.94e-01 100.0% 54.0%
3fogA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.60 43.0 3.57e-01 80.8% 40.2%
2ya0A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 49.0 3.96e-01 92.3% 100.0%
4a2bA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.60 48.0 3.93e-01 88.5% 87.4%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.60 45.0 3.01e-01 88.5% 37.3%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 51.0 4.16e-01 100.0% 52.4%
7o0eA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 43.0 3.76e-01 78.8% 100.0%
3gd6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.58 44.0 3.32e-01 86.5% 34.5%
4dzoA02 3.30.457.60 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.58 39.0 3.52e-01 71.2% 53.2%
4kujA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 43.0 3.14e-01 82.7% 72.7%
4mjgA00 3.30.2030.30 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.58 41.0 2.92e-01 78.8% 58.8%
2i2lA01 2.10.70.50 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.57 45.0 4.57e-01 88.5% 98.1%
1fyhB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 46.0 3.78e-01 90.4% 82.5%
3qszA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 48.0 3.38e-01 96.2% 61.6%
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 39.0 3.65e-01 78.8% 56.7%
1e8oD00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.57 43.0 3.93e-01 88.5% 63.2%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.57 41.0 3.75e-01 86.5% 57.7%
4jpqA00 2.60.40.1190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 46.0 3.16e-01 96.2% 32.9%
1a87A01 3.30.1120.60 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Colicin 0.56 46.0 3.89e-01 98.1% 82.5%
2x3hA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.56 40.0 2.28e-01 75.0% 8.4%
2mdrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 40.0 3.45e-01 82.7% 54.3%
5t1dB00 3.10.390.20 Alpha Beta › Roll › SAND domain › Viral glycoprotein L 0.55 42.0 3.55e-01 90.4% 47.5%
3f2kB00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.55 43.0 3.19e-01 100.0% 77.0%
5x6vG00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 43.0 3.32e-01 90.4% 45.5%
3h6rA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 43.0 3.19e-01 94.2% 98.7%
2q1zB02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 37.0 3.13e-01 73.1% 96.8%
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 46.0 3.60e-01 100.0% 44.7%
3ld7A00 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.53 42.0 3.69e-01 94.2% 69.0%
5odnC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 39.0 3.23e-01 82.7% 71.6%
1nunA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 41.0 3.23e-01 98.1% 59.7%
2x5gA00 3.30.720.60 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.51 40.0 3.42e-01 88.5% 61.5%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 43.0 3.70e-01 96.2% 62.8%
6g62A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 42.0 3.42e-01 100.0% 95.7%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 41.0 3.51e-01 98.1% 72.6%
4obiA00 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.51 42.0 3.67e-01 100.0% 71.3%
5n70A02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.51 38.0 2.81e-01 86.5% 65.2%
ECOD (82)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4929797 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.84 60.0 5.76e-01 80.8% 66.1%
3965134 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.79 68.0 5.31e-01 100.0% 44.3%
3709245 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.78 57.0 4.84e-01 90.4% 48.2%
3970208 6043.1.1.7 a+b two layers › yfeY-like › yfeY-like › yfeY-like › DUF2845 0.77 53.0 4.69e-01 73.1% 68.0%
3802207 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.76 64.0 3.84e-01 90.4% 14.9%
3290321 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.75 67.0 5.38e-01 100.0% 56.0%
5013584 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.74 48.0 4.40e-01 71.2% 50.0%
3496419 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.73 65.0 3.55e-01 100.0% 14.7%
3224154 5.1.4.304 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_2nd 0.73 64.0 3.88e-01 100.0% 36.2%
4380331 295.1.1.27 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF25991 0.73 62.0 5.72e-01 100.0% 78.6%
4341865 4325.1.1.1 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.73 51.0 5.02e-01 76.9% 69.1%
4160544 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.72 64.0 4.55e-01 98.1% 96.7%
3176175 5.1.4.250 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF2415 0.72 63.0 3.78e-01 100.0% 40.3%
3502044 243.19.1.0 a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.72 52.0 4.18e-01 78.8% 50.5%
3581093 4292.2.1.0 a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.71 60.0 5.31e-01 98.1% 83.7%
4161397 5.1.3.48 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Gmad1 0.71 61.0 3.83e-01 100.0% 38.7%
3784764 5.1.4.169 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.71 61.0 3.71e-01 100.0% 37.7%
3295376 4.26.1.0 beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.70 46.0 5.27e-01 71.2% 100.0%
3926057 5.1.5.75 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, ANAPC4_WD40 0.70 60.0 3.68e-01 98.1% 23.7%
3228776 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.70 51.0 3.18e-01 80.8% 13.9%
1031143 6043.1.1.3 a+b two layers › yfeY-like › yfeY-like › yfeY-like › CAP_assoc_N 0.70 51.0 4.50e-01 76.9% 54.1%
3582026 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.69 60.0 5.20e-01 96.2% 83.7%
3934097 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.69 48.0 3.60e-01 75.0% 30.7%
3255777 4075.1.1.2 a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.69 58.0 4.84e-01 98.1% 86.3%
3579466 101.15.1.0 alpha arrays › HTH › LysM domain › LysM domain 0.68 46.0 4.59e-01 71.2% 96.4%
3228340 4075.1.1.2 a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.68 57.0 4.71e-01 98.1% 93.0%
3264756 4075.1.1.2 a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.68 57.0 4.68e-01 98.1% 82.0%
4974493 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.68 58.0 3.71e-01 100.0% 48.0%
5012193 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 58.0 3.83e-01 96.2% 29.5%
3365419 5.3.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop 0.68 58.0 4.32e-01 100.0% 64.3%
4376478 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.68 52.0 4.36e-01 84.6% 61.1%
3707862 79.1.1.0 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.67 51.0 4.46e-01 82.7% 60.0%
3263735 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 60.0 3.59e-01 100.0% 24.6%
3968900 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.67 48.0 3.66e-01 76.9% 38.3%
3214097 330.1.1.24 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Paxt-1_C 0.67 51.0 4.40e-01 84.6% 56.5%
1005445 243.11.1.1 a+b two layers › Cystatin-like › NP_346341.1 protein › NP_346341.1 protein › DUF4651 0.66 48.0 4.41e-01 80.8% 58.6%
3939443 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.66 45.0 3.64e-01 73.1% 43.6%
5076085 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.66 53.0 3.57e-01 90.4% 62.9%
4648495 5.1.3.48 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Gmad1 0.66 57.0 3.65e-01 100.0% 29.6%
3703649 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.66 48.0 4.26e-01 80.8% 56.2%
3236050 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.65 45.0 3.58e-01 73.1% 41.8%
3783252 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 56.0 3.38e-01 100.0% 23.3%
3231343 77.1.1.10 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › PF28998 0.64 46.0 3.43e-01 75.0% 30.8%
4966527 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.64 52.0 4.37e-01 90.4% 52.2%
5019486 5090.1.1.6 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › S-layer 0.64 54.0 4.14e-01 96.2% 65.0%
4961801 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.64 51.0 3.46e-01 90.4% 65.4%
3995842 10.1.1.4 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.64 53.0 3.60e-01 94.2% 37.6%
3170635 5.1.7.2 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › Sortilin-Vps10 0.64 53.0 3.13e-01 100.0% 19.2%
3230503 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.64 46.0 3.18e-01 88.5% 21.6%
3510918 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.63 53.0 4.01e-01 98.1% 68.9%
4106397 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.63 48.0 4.29e-01 82.7% 66.7%
4104221 5.1.7.5 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › BNR, Sortilin-Vps10 0.63 54.0 3.17e-01 100.0% 29.8%
4675181 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.63 45.0 3.72e-01 78.8% 42.1%
4929818 861.1.1.0 a+b two layers › Mago nashi protein › Mago nashi protein › Mago nashi protein 0.62 51.0 3.86e-01 96.2% 92.6%
3717304 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.62 53.0 3.31e-01 100.0% 29.9%
3288997 304.125.1.2 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in Api92-like proteins › ferredoxin-like domain in Api92-like proteins › DUF6461 0.61 49.0 3.55e-01 88.5% 70.0%
3402045 220.1.1.158 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.61 53.0 4.27e-01 100.0% 59.0%
3462961 5.1.4.122 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF295 0.61 52.0 3.36e-01 100.0% 44.3%
None 0.61 42.0 2.53e-01 71.2% 24.7%
3166135 4312.1.1.4 a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 0.61 46.0 3.86e-01 90.4% 46.3%
852 9.1.1.29 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › BFA1_C 0.61 52.0 3.94e-01 100.0% 54.0%
3782338 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.61 44.0 3.70e-01 78.8% 48.4%
3846927 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.61 44.0 3.69e-01 78.8% 45.3%
136506 4075.1.1.2 a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.60 49.0 4.15e-01 98.1% 89.9%
3591979 77.2.1.1 beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.60 51.0 3.67e-01 98.1% 32.3%
3480636 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.60 50.0 2.94e-01 100.0% 45.3%
4944430 244.3.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.60 46.0 4.08e-01 96.2% 56.2%
5029476 206.1.1.9 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 0.60 50.0 3.46e-01 96.2% 69.2%
3286459 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 46.0 3.17e-01 88.5% 84.6%
3728854 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.59 46.0 4.27e-01 82.7% 75.4%
3593387 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 41.0 3.11e-01 80.8% 28.4%
3722450 223.2.1.10 a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.58 42.0 3.14e-01 82.7% 28.3%
3445637 206.1.1.14 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › ABC1 0.58 51.0 3.14e-01 100.0% 36.7%
3718648 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 46.0 3.71e-01 90.4% 44.4%
5022840 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.57 44.0 3.90e-01 90.4% 63.5%
3924545 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.57 39.0 3.07e-01 73.1% 38.3%
3812257 2003.1.6.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like 0.57 47.0 3.37e-01 100.0% 51.7%
3579887 5.1.5.62 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_LRRK2 0.55 43.0 2.89e-01 100.0% 35.4%
4965528 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.54 44.0 3.01e-01 96.2% 32.4%
4990645 2484.1.1.139 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF429 0.54 42.0 3.01e-01 86.5% 60.0%
4990438 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 41.0 3.20e-01 86.5% 52.0%
4952930 2.21.1.0 beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.53 41.0 3.60e-01 90.4% 78.8%
D2 medium residues 74-129
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 63.0 6.45e-01 94.6% 100.0%
1jb0E00 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.75 65.0 6.09e-01 96.4% 94.2%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 58.0 5.97e-01 96.4% 98.1%
2wacA01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 49.0 3.88e-01 80.4% 61.9%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 49.0 5.21e-01 92.9% 91.8%
7razA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 48.0 4.21e-01 94.6% 51.8%
1ug1A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 57.0 4.89e-01 100.0% 67.4%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 49.0 4.46e-01 100.0% 60.0%
1bcoA02 2.30.30.130 Mainly Beta › Roll › SH3 type barrels. › Transposase, Mu, C-terminal 0.63 50.0 4.72e-01 87.5% 98.5%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 51.0 4.85e-01 94.6% 100.0%
3e1sA04 2.30.30.940 Mainly Beta › Roll › SH3 type barrels. › 0.62 51.0 4.77e-01 94.6% 75.4%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 53.0 5.07e-01 100.0% 97.0%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 51.0 4.89e-01 100.0% 95.6%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 51.0 4.61e-01 96.4% 74.4%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 45.0 3.95e-01 91.1% 91.9%
4up7A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 47.0 3.53e-01 92.9% 71.7%
6l4qB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 47.0 3.62e-01 92.9% 81.5%
2gtjA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 45.0 4.26e-01 96.4% 75.7%
1awjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 45.0 4.16e-01 96.4% 72.7%
2hvfA00 3.40.5.10 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › Ribosomal protein L9, N-terminal domain 0.56 39.0 4.08e-01 100.0% 80.8%
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 41.0 3.41e-01 85.7% 75.4%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 45.0 4.52e-01 100.0% 96.6%
1mr1D00 3.10.390.10 Alpha Beta › Roll › SAND domain › SAND domain-like 0.54 46.0 3.95e-01 100.0% 77.1%
1rk6A03 3.30.1490.130 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › D-aminoacylase. Domain 3 0.54 39.0 3.95e-01 92.9% 77.2%
1awoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 45.0 4.57e-01 100.0% 98.2%
2rceA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 43.0 3.58e-01 96.4% 49.1%
2ew0A00 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.53 43.0 3.20e-01 100.0% 90.9%
2ok7A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 35.0 2.97e-01 71.4% 81.2%
3l4gB02 3.50.40.10 Alpha Beta › 3-Layer(bba) Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 3 › Phenylalanyl-trna Synthetase, Chain B, domain 3 0.52 43.0 3.06e-01 100.0% 91.3%
1vx4404 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 35.0 2.75e-01 73.2% 72.9%
1dwuA01 3.30.190.20 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribosomal protein L1/L10, rRNA-binding domain 0.50 35.0 2.85e-01 76.8% 98.3%
2hldH01 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.50 39.0 3.59e-01 94.6% 83.3%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4854120 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.78 52.0 5.14e-01 76.8% 66.1%
4208181 4.1.1.70 beta barrels › SH3 › SH3 › SH3 › Tsr0524-like 0.76 67.0 6.38e-01 98.2% 93.8%
4400641 4.1.1.397 beta barrels › SH3 › SH3 › SH3 › PF29622 0.74 62.0 5.55e-01 94.6% 90.0%
3701345 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 60.0 5.37e-01 92.9% 85.0%
3518287 4.1.1.347 beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.71 62.0 4.93e-01 100.0% 53.0%
4888491 4.1.1.73 beta barrels › SH3 › SH3 › SH3 › Cul7 0.69 52.0 5.20e-01 82.1% 78.9%
3211367 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 59.0 5.05e-01 100.0% 67.8%
3564972 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 55.0 5.18e-01 100.0% 75.7%
3482676 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 55.0 5.47e-01 96.4% 98.3%
3396897 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 54.0 5.22e-01 94.6% 93.7%
4019215 4.1.1.303 beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.65 58.0 5.39e-01 100.0% 85.7%
3522694 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 56.0 4.81e-01 100.0% 65.3%
4021478 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 57.0 5.00e-01 100.0% 70.6%
3234923 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.64 53.0 5.18e-01 94.6% 95.2%
3995160 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.64 51.0 5.34e-01 98.2% 98.0%
4003181 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.64 53.0 5.20e-01 92.9% 98.3%
3390253 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 54.0 5.00e-01 98.2% 80.0%
3589606 4.1.1.109 beta barrels › SH3 › SH3 › SH3 › SH3_13 0.64 52.0 4.93e-01 92.9% 84.3%
3576127 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.64 47.0 4.08e-01 80.4% 82.2%
3537941 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.63 54.0 4.81e-01 100.0% 72.9%
3231675 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.63 54.0 5.05e-01 100.0% 85.7%
2410381 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.62 53.0 4.83e-01 100.0% 83.5%
3540253 4.1.1.78 beta barrels › SH3 › SH3 › SH3 › TTD 0.62 54.0 4.60e-01 100.0% 68.4%
4976501 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 47.0 4.09e-01 82.1% 84.7%
25838 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.61 52.0 4.75e-01 100.0% 79.7%
3873942 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 51.0 4.96e-01 98.2% 92.3%
4979291 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.61 51.0 4.71e-01 98.2% 72.0%
2410170 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.61 50.0 4.87e-01 92.9% 95.2%
3463482 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 52.0 4.40e-01 100.0% 62.0%
3618274 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.61 52.0 4.52e-01 100.0% 64.4%
3594811 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 48.0 4.69e-01 92.9% 98.5%
3274501 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 49.0 3.60e-01 92.9% 76.8%
3900733 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.59 47.0 4.50e-01 96.4% 84.3%
3631215 316.1.1.14 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD 0.55 41.0 2.92e-01 85.7% 53.0%
3782486 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.53 39.0 2.72e-01 83.9% 46.7%
4537356 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.53 42.0 4.20e-01 96.4% 100.0%
D3 medium residues 131-164
PDB