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OR263580.1__WNA15424.1__SAMYPH_93__00093

Bact-Vir

OR263580.1__WNA15424.1__SAMYPH_93__00093

Identity

Accession:
OR263580 ↗
Kingdom:
phage

Quality

85.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-64
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1a0iA01 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.70 54.0 4.69e-01 86.8% 54.2%
2wbmA03 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.70 51.0 4.72e-01 79.2% 98.6%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.68 51.0 4.29e-01 81.1% 80.4%
1z1dB00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.68 49.0 3.81e-01 81.1% 56.5%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.67 49.0 4.99e-01 79.2% 98.0%
2aehA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.67 55.0 4.57e-01 92.5% 52.1%
4ekuA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.65 56.0 4.37e-01 98.1% 45.3%
3dfeA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 50.0 4.45e-01 88.7% 95.1%
2zuoA09 2.30.30.570 Mainly Beta › Roll › SH3 type barrels. › 0.65 40.0 3.81e-01 81.1% 50.8%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.65 47.0 4.03e-01 81.1% 57.6%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.64 49.0 4.61e-01 84.9% 74.2%
3gidB02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.63 46.0 4.10e-01 83.0% 51.8%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.63 53.0 3.86e-01 100.0% 89.8%
3tcaA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.63 50.0 4.25e-01 92.5% 52.2%
2h5eA03 3.30.70.3280 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptide chain release factor 3, domain III 0.63 46.0 3.56e-01 83.0% 78.8%
4pofA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.62 47.0 4.80e-01 84.9% 88.0%
2yuxA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 50.0 4.13e-01 98.1% 78.7%
1s7hA02 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 43.0 3.89e-01 79.2% 87.8%
2ed8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 47.0 4.14e-01 94.3% 57.0%
1wvqA00 3.40.1520.10 Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1634 › Ta1353-like 0.60 43.0 3.22e-01 83.0% 63.8%
2xy1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 48.0 4.03e-01 92.5% 60.8%
5u3fB01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.59 40.0 3.06e-01 71.7% 85.0%
4lvnP00 3.30.70.2380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 42.0 3.76e-01 79.2% 95.1%
6womA02 3.30.1360.30 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › GAD-like domain 0.59 40.0 3.02e-01 71.7% 53.6%
3d4rE01 2.40.128.400 Mainly Beta › Beta Barrel › Lipocalin › 0.59 36.0 3.20e-01 86.8% 36.9%
7qu8A01 2.60.220.50 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › 0.58 37.0 2.50e-01 88.7% 16.3%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 46.0 4.02e-01 94.3% 58.2%
7rlrA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.58 41.0 2.79e-01 79.2% 58.8%
4me3A03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.58 43.0 4.32e-01 84.9% 89.1%
6l4lA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.57 44.0 3.46e-01 84.9% 100.0%
3pv7A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 46.0 3.89e-01 92.5% 66.0%
4dqnA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.57 45.0 3.28e-01 88.7% 70.9%
1yuzA02 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.57 37.0 4.07e-01 79.2% 92.1%
3qhyA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.56 40.0 2.69e-01 81.1% 55.4%
3wqbA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 47.0 3.40e-01 98.1% 61.4%
5k9aA00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.56 46.0 3.15e-01 96.2% 62.8%
4iedA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.56 40.0 2.74e-01 83.0% 47.5%
1zc1A01 2.40.40.50 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › Ubiquitin fusion degradation protein UFD1, N-terminal domain 0.55 44.0 3.68e-01 94.3% 56.3%
1wkyA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 45.0 3.45e-01 100.0% 58.3%
4cvuA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 44.0 3.13e-01 100.0% 40.2%
1xffA00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.54 41.0 2.78e-01 84.9% 52.9%
1ghpA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 38.0 2.54e-01 79.2% 73.2%
5fr6A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 37.0 3.40e-01 94.3% 53.0%
3hrzC01 2.20.210.20 Mainly Beta › Single Sheet › ubp-family deubiquitinating enzyme fold › 0.52 39.0 4.00e-01 83.0% 93.9%
3snoA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.52 42.0 3.27e-01 88.7% 97.5%
3w1yB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 37.0 3.23e-01 83.0% 63.5%
2re9A01 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.52 38.0 2.87e-01 83.0% 68.2%
5ja1B00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.52 36.0 3.44e-01 84.9% 60.6%
2d8bA01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.52 39.0 3.09e-01 88.7% 50.7%
2wadA02 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.51 40.0 3.15e-01 100.0% 39.2%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4970537 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.75 53.0 5.83e-01 86.8% 100.0%
3595016 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.71 58.0 4.57e-01 92.5% 43.6%
143128 304.55.1.4 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › T_Ag_DNA_bind 0.71 52.0 4.07e-01 81.1% 61.3%
4028011 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 50.0 5.33e-01 84.9% 100.0%
149640 221.1.1.87 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N_2 0.65 56.0 4.34e-01 98.1% 44.2%
3701633 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.64 52.0 4.49e-01 94.3% 56.5%
3728969 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.64 51.0 4.26e-01 92.5% 49.5%
4929321 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 47.0 4.55e-01 84.9% 70.0%
3935405 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.64 50.0 4.36e-01 92.5% 56.7%
3200782 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.64 50.0 4.23e-01 92.5% 49.5%
3695272 221.1.1.93 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF2420 0.64 51.0 3.84e-01 90.6% 43.7%
4626453 868.1.1.3 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med20 0.63 46.0 3.16e-01 83.0% 94.4%
3688295 221.1.1.73 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RASSF8-10_RA 0.63 50.0 4.37e-01 92.5% 55.3%
4961379 4176.1.1.2 a/b three-layered sandwiches › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › S-Me-THD_N 0.63 49.0 3.31e-01 88.7% 62.7%
3406258 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.63 51.0 4.33e-01 94.3% 53.3%
4807171 5089.1.1.1 beta complex topology › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Thiol_cytolysin 0.63 48.0 3.10e-01 84.9% 38.9%
3998576 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.63 54.0 3.81e-01 100.0% 43.4%
3957055 304.128.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.62 46.0 3.82e-01 79.2% 80.0%
3582714 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.62 52.0 4.40e-01 98.1% 54.7%
3849943 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.62 49.0 3.63e-01 92.5% 32.4%
3211869 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.62 49.0 4.27e-01 94.3% 56.7%
4794127 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.62 49.0 3.97e-01 92.5% 44.8%
3405569 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.62 48.0 3.89e-01 92.5% 42.7%
3499188 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.62 50.0 4.29e-01 100.0% 87.0%
3935404 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.61 48.0 4.17e-01 92.5% 60.0%
3404684 10.12.1.84 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › VKGC_lumenal_dom 0.61 51.0 3.38e-01 92.5% 38.6%
3721040 4176.1.1.2 a/b three-layered sandwiches › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › S-Me-THD_N 0.60 49.0 3.23e-01 94.3% 56.7%
3884573 11.1.1.318 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL3Rb_N 0.60 49.0 4.13e-01 90.6% 62.2%
3586126 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.60 48.0 3.70e-01 92.5% 37.6%
3575366 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.60 47.0 4.04e-01 92.5% 54.7%
4082584 7579.1.1.5 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10 0.60 52.0 2.95e-01 100.0% 22.0%
3958897 4187.2.1.0 a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.60 43.0 3.48e-01 83.0% 69.2%
4567075 10.12.1.84 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › VKGC_lumenal_dom 0.59 44.0 2.89e-01 88.7% 23.2%
3928208 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.58 42.0 3.92e-01 83.0% 100.0%
3957598 2004.1.2.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_GTP 0.58 43.0 2.93e-01 84.9% 23.0%
1763719 7516.1.1.1 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transferase 0.58 48.0 3.20e-01 100.0% 22.1%
3698362 11.1.1.1046 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28431 0.58 48.0 3.63e-01 94.3% 47.4%
3738951 11.1.1.642 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-like_Pom152_1 0.56 41.0 3.38e-01 83.0% 59.1%
3551231 221.1.1.87 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N_2 0.56 43.0 3.68e-01 92.5% 47.6%
3535929 386.1.1.248 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_ZNF592 0.56 40.0 2.91e-01 81.1% 24.0%
4979655 301.9.1.1 a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA 0.55 44.0 3.57e-01 100.0% 83.2%
3281602 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.55 41.0 4.24e-01 83.0% 91.7%
4990489 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 41.0 4.21e-01 83.0% 94.0%
4252647 10.32.1.88 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Glyco_hydro_2_N2 0.54 44.0 3.10e-01 100.0% 39.0%
4945301 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 36.0 2.75e-01 71.7% 56.7%
3917163 209.1.1.1 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.53 39.0 2.90e-01 84.9% 40.9%
3911194 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.52 41.0 3.68e-01 92.5% 93.8%
4000362 223.2.1.36 a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_3 0.51 35.0 2.97e-01 73.6% 54.3%
3479367 822.1.1.1 a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.51 38.0 3.65e-01 86.8% 71.9%
3230674 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 38.0 3.94e-01 84.9% 100.0%
3782443 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.50 41.0 2.97e-01 94.3% 39.4%
3969578 3268.1.1.0 a+b two layers › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase 0.50 37.0 3.66e-01 90.6% 76.4%