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OR283215.1__WNY15099.1__SEA_DOOBY_19__00019
Bact-VirOR283215.1__WNY15099.1__SEA_DOOBY_19__00019
Identity
- Accession:
- OR283215 ↗
- Kingdom:
- phage
Quality
85.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Orlajensenviridae›
Paopuvirus›
Microbacterium_phage_Dooby
TaxID: 3075187
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 24-74
Domain cluster:
representative
CATH (45)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vq8P03 | 1.10.1200.60 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › | 0.86 | 66.0 | 6.50e-01 | 82.4% | 76.4% |
| 1zmbA02 | 6.10.170.10 | Special › Helix non-globular › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › | 0.82 | 55.0 | 6.28e-01 | 84.3% | 100.0% |
| 2o5iN07 | 1.10.132.30 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain | 0.81 | 73.0 | 5.50e-01 | 100.0% | 74.1% |
| 5fmnA00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.81 | 64.0 | 5.35e-01 | 100.0% | 51.2% |
| 4kb2A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.80 | 70.0 | 5.46e-01 | 98.0% | 76.1% |
| 2cazD00 | 6.10.140.820 | Special › Helix non-globular › Helix Hairpins › | 0.80 | 70.0 | 6.61e-01 | 96.1% | 88.3% |
| 1tj7A01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.80 | 67.0 | 5.23e-01 | 98.0% | 44.8% |
| 3kd3A02 | 1.10.150.210 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Phosphoserine phosphatase; domain 2 | 0.80 | 54.0 | 5.12e-01 | 74.5% | 60.0% |
| 2nn4A00 | 1.10.287.760 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like | 0.79 | 60.0 | 5.67e-01 | 94.1% | 67.7% |
| 4g3vA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.79 | 66.0 | 4.50e-01 | 90.2% | 86.4% |
| 4k08A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.78 | 64.0 | 4.64e-01 | 92.2% | 92.4% |
| 5uh5D02 | 1.10.132.30 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain | 0.78 | 67.0 | 4.91e-01 | 98.0% | 59.4% |
| 3ed5A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.77 | 57.0 | 4.83e-01 | 80.4% | 48.8% |
| 3c8tA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.72 | 60.0 | 4.82e-01 | 96.1% | 47.4% |
| 3qo8A01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.72 | 59.0 | 4.67e-01 | 92.2% | 50.9% |
| 1skvA00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.70 | 57.0 | 5.33e-01 | 90.2% | 100.0% |
| 2e9xA01 | 1.20.58.1030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 57.0 | 4.31e-01 | 92.2% | 58.6% |
| 1p49A02 | 1.10.287.550 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.70 | 58.0 | 5.62e-01 | 96.1% | 83.1% |
| 2qguA01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.70 | 60.0 | 4.86e-01 | 100.0% | 92.1% |
| 1hr5A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.69 | 58.0 | 5.99e-01 | 92.2% | 100.0% |
| 6dv2G02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.69 | 61.0 | 4.12e-01 | 100.0% | 38.0% |
| 5b1oA00 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.69 | 59.0 | 5.45e-01 | 96.1% | 75.4% |
| 4nq0A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.69 | 58.0 | 3.72e-01 | 96.1% | 19.7% |
| 6t0bc01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.69 | 57.0 | 5.01e-01 | 94.1% | 64.1% |
| 3qnmA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.68 | 52.0 | 4.40e-01 | 84.3% | 48.9% |
| 3bemB00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.68 | 53.0 | 3.54e-01 | 92.2% | 21.5% |
| 6ldkA01 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.68 | 55.0 | 3.90e-01 | 94.1% | 29.1% |
| 2e62A01 | 6.10.140.420 | Special › Helix non-globular › Helix Hairpins › | 0.67 | 54.0 | 5.47e-01 | 98.0% | 94.2% |
| 1op1A00 | 1.20.81.10 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain | 0.67 | 55.0 | 4.76e-01 | 98.0% | 58.5% |
| 2jaeA03 | 1.20.1440.240 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.67 | 56.0 | 4.60e-01 | 98.0% | 55.4% |
| 4l8jA04 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.67 | 55.0 | 5.30e-01 | 94.1% | 83.1% |
| 1r1dA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.66 | 49.0 | 3.16e-01 | 80.4% | 17.4% |
| 3k6jA02 | 1.10.1040.50 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › | 0.66 | 52.0 | 3.53e-01 | 90.2% | 68.8% |
| 2aj6A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.65 | 47.0 | 3.66e-01 | 82.4% | 33.3% |
| 4ap9A02 | 1.10.150.210 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Phosphoserine phosphatase; domain 2 | 0.65 | 47.0 | 4.47e-01 | 80.4% | 65.0% |
| 6zxqA01 | 1.10.300.10 | Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2 | 0.65 | 45.0 | 3.86e-01 | 84.3% | 41.9% |
| 1vf7A03 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.65 | 54.0 | 5.17e-01 | 96.1% | 85.0% |
| 2a2cA03 | 1.20.1440.340 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.63 | 54.0 | 4.01e-01 | 98.0% | 61.6% |
| 2zy9A03 | 1.10.357.20 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › SLC41 divalent cation transporters, integral membrane domain | 0.62 | 53.0 | 3.69e-01 | 98.0% | 67.2% |
| 1rsoB00 | 1.10.287.650 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain | 0.62 | 49.0 | 4.89e-01 | 98.0% | 87.5% |
| 1q6aA00 | 1.10.1240.30 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain | 0.60 | 50.0 | 4.10e-01 | 100.0% | 48.6% |
| 7ymiZ01 | 1.10.287.740 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre | 0.59 | 49.0 | 4.72e-01 | 94.1% | 94.8% |
| 3k6tB00 | 1.20.5.4010 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.59 | 48.0 | 4.89e-01 | 100.0% | 95.9% |
| 2mj6A00 | 3.30.450.250 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.56 | 45.0 | 3.90e-01 | 98.0% | 88.9% |
| 1mw9X02 | 1.10.460.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 | 0.55 | 46.0 | 3.35e-01 | 96.1% | 35.0% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3188198 | 3151.1.1.0 ↗ | alpha arrays › SPP1 phage GP23.1 › SPP1 phage GP23.1 › SPP1 phage GP23.1 | 0.90 | 67.0 | 7.43e-01 | 84.3% | 100.0% |
| 2772104 | 103.1.1.13 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RNA_pol_Rpo13 | 0.88 | 70.0 | 7.44e-01 | 84.3% | 100.0% |
| 3988447 | 5043.1.1.0 ↗ | extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like | 0.86 | 74.0 | 7.18e-01 | 96.1% | 85.5% |
| 3631184 | 3151.1.1.0 ↗ | alpha arrays › SPP1 phage GP23.1 › SPP1 phage GP23.1 › SPP1 phage GP23.1 | 0.85 | 71.0 | 7.50e-01 | 94.1% | 100.0% |
| 3769584 | 4146.1.1.4 ↗ | alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like › FAM216B | 0.84 | 69.0 | 5.84e-01 | 98.0% | 56.2% |
| 4959593 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.84 | 68.0 | 4.93e-01 | 92.2% | 32.9% |
| 4012698 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.84 | 71.0 | 5.58e-01 | 100.0% | 47.0% |
| 4620052 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.83 | 74.0 | 4.37e-01 | 98.0% | 13.7% |
| 4641055 | 2004.1.1.6 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran,oligo_HPY | 0.82 | 74.0 | 4.32e-01 | 98.0% | 13.1% |
| 3269863 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.81 | 69.0 | 4.01e-01 | 92.2% | 12.4% |
| 3539738 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.81 | 71.0 | 4.54e-01 | 96.1% | 22.7% |
| 3973870 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.81 | 69.0 | 4.30e-01 | 98.0% | 18.4% |
| 4419476 | 4958.1.1.1 ↗ | a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 0.80 | 72.0 | 4.91e-01 | 100.0% | 49.1% |
| 4457905 | 4952.1.1.0 ↗ | alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like | 0.80 | 67.0 | 5.35e-01 | 100.0% | 47.0% |
| 3265542 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.79 | 62.0 | 6.58e-01 | 92.2% | 100.0% |
| 151743 | 4146.1.1.2 ↗ | alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like › RNA_pol_Rpo13 | 0.78 | 65.0 | 6.62e-01 | 96.1% | 94.0% |
| 4996648 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.78 | 62.0 | 4.29e-01 | 98.0% | 27.7% |
| 3725377 | 192.15.1.44 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › DUF6604 | 0.77 | 68.0 | 5.63e-01 | 98.0% | 57.8% |
| 3975170 | 2485.1.1.6 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › FHIPEP | 0.77 | 67.0 | 4.29e-01 | 98.0% | 22.1% |
| 3218210 | 2004.1.1.184 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 | 0.77 | 66.0 | 4.09e-01 | 96.1% | 24.3% |
| 4944191 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.76 | 66.0 | 4.79e-01 | 96.1% | 38.1% |
| 4321594 | 4952.1.1.0 ↗ | alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like | 0.75 | 64.0 | 4.96e-01 | 100.0% | 43.6% |
| 3628378 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.75 | 64.0 | 4.46e-01 | 96.1% | 32.1% |
| 3486312 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.75 | 65.0 | 4.91e-01 | 96.1% | 44.5% |
| 5054079 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.75 | 66.0 | 5.70e-01 | 100.0% | 81.2% |
| 3282520 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.74 | 66.0 | 5.94e-01 | 100.0% | 84.3% |
| 5046655 | 4952.1.1.0 ↗ | alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like | 0.74 | 62.0 | 5.03e-01 | 98.0% | 49.5% |
| 4506328 | 1054.1.1.1 ↗ | alpha bundles › Arginine decarboxylase C-terminal helical extension › Arginine decarboxylase C-terminal helical extension › Arginine decarboxylase C-terminal helical extension › Arg_decarbox_C | 0.73 | 56.0 | 5.71e-01 | 100.0% | 88.0% |
| 3930836 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.73 | 63.0 | 4.74e-01 | 96.1% | 72.5% |
| 3644708 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.73 | 58.0 | 3.78e-01 | 96.1% | 20.5% |
| 3941435 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.73 | 65.0 | 4.63e-01 | 100.0% | 66.0% |
| 3786677 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.72 | 61.0 | 5.96e-01 | 94.1% | 90.9% |
| 3355246 | 192.1.1.0 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain | 0.71 | 61.0 | 5.22e-01 | 94.1% | 67.5% |
| 3468553 | 328.7.1.0 ↗ | a+b two layers › IF3-like › Smr domain › Smr domain | 0.68 | 58.0 | 4.13e-01 | 96.1% | 33.3% |
| 1515939 | 244.1.1.6 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase | 0.67 | 56.0 | 3.50e-01 | 98.0% | 17.6% |
| 4270602 | 2003.1.2.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.67 | 56.0 | 3.36e-01 | 98.0% | 14.0% |
| 5049697 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.65 | 53.0 | 3.89e-01 | 98.0% | 36.0% |
| 4308066 | 7579.1.1.5 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10 | 0.64 | 52.0 | 3.07e-01 | 98.0% | 10.6% |
| 3665129 | 109.4.1.123 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › U3_assoc_6 | 0.62 | 51.0 | 3.67e-01 | 96.1% | 60.0% |