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OR296290.1__WNL49177.1__X__00043
Bact-VirOR296290.1__WNL49177.1__X__00043
Identity
- Accession:
- OR296290 ↗
- Kingdom:
- phage
Quality
79.3
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Mtkvariviridae›
Kuravirus›
Escherichia_phage_SDYTW1-F1-2-2_3
TaxID: 3073059
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 54-99
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8d8lN01 | 1.10.287.1480 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.85 | 61.0 | 4.83e-01 | 78.3% | 40.7% |
| 1cmjA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.81 | 57.0 | 3.28e-01 | 78.3% | 8.5% |
| 2w3cA02 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.81 | 66.0 | 3.94e-01 | 87.0% | 14.0% |
| 5aj3N01 | 1.10.287.1480 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.79 | 57.0 | 4.48e-01 | 78.3% | 38.5% |
| 1lfkA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.78 | 57.0 | 3.34e-01 | 78.3% | 19.7% |
| 2xppA00 | 1.20.930.10 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.75 | 68.0 | 4.75e-01 | 100.0% | 94.2% |
| 4hojA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.74 | 56.0 | 4.28e-01 | 84.8% | 36.9% |
| 2qsbA00 | 1.20.1440.50 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like | 0.73 | 60.0 | 4.83e-01 | 93.5% | 48.2% |
| 3h95A01 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.72 | 52.0 | 3.71e-01 | 78.3% | 87.0% |
| 3nfqB02 | 1.20.930.10 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.71 | 64.0 | 4.81e-01 | 100.0% | 75.0% |
| 3tufA00 | 1.10.287.4300 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Stage III sporulation protein AH-like | 0.70 | 58.0 | 4.28e-01 | 93.5% | 36.5% |
| 2qyuA02 | 1.25.40.300 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Putative secreted effector protein | 0.68 | 54.0 | 3.61e-01 | 91.3% | 37.9% |
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.67 | 51.0 | 4.81e-01 | 87.0% | 67.2% |
| 7ep1B01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.67 | 58.0 | 3.62e-01 | 97.8% | 81.4% |
| 4c0eA01 | 1.25.40.790 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.66 | 55.0 | 3.45e-01 | 100.0% | 38.9% |
| 5hyhA00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.66 | 55.0 | 3.42e-01 | 100.0% | 15.7% |
| 3uarA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.65 | 49.0 | 3.74e-01 | 84.8% | 35.5% |
| 2vj4A01 | 1.10.10.2060 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.64 | 46.0 | 3.78e-01 | 78.3% | 78.9% |
| 1s5jA04 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.64 | 55.0 | 5.00e-01 | 100.0% | 73.8% |
| 1wn0A00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.60 | 47.0 | 3.49e-01 | 89.1% | 81.7% |
| 3behB01 | 1.20.120.540 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels | 0.60 | 48.0 | 3.68e-01 | 95.7% | 63.2% |
| 2pmsC00 | 6.10.140.920 | Special › Helix non-globular › Helix Hairpins › | 0.59 | 45.0 | 3.51e-01 | 93.5% | 37.6% |
| 3layF00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.58 | 44.0 | 3.73e-01 | 87.0% | 48.7% |
| 2guzB00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.57 | 46.0 | 4.18e-01 | 95.7% | 66.2% |
| 3mq1A01 | 1.20.58.970 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 44.0 | 3.66e-01 | 95.7% | 73.9% |
| 2pvqA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.55 | 42.0 | 3.51e-01 | 100.0% | 95.3% |
| 2aaaA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 41.0 | 2.45e-01 | 93.5% | 47.9% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2028819 | 377.1.1.2 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_S14 | 0.88 | 62.0 | 4.44e-01 | 78.3% | 29.6% |
| 3620630 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.83 | 60.0 | 5.09e-01 | 78.3% | 50.0% |
| 52577 | 149.1.1.0 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 | 0.83 | 58.0 | 3.33e-01 | 78.3% | 8.5% |
| 4376902 | 377.1.1.2 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_S14 | 0.83 | 60.0 | 4.59e-01 | 78.3% | 37.2% |
| 3269316 | 377.1.1.2 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_S14 | 0.81 | 59.0 | 4.50e-01 | 78.3% | 36.8% |
| 3935467 | 377.1.1.2 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_S14 | 0.81 | 59.0 | 4.32e-01 | 78.3% | 32.1% |
| 4020944 | 2498.1.1.12 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M4,Peptidase_M4_C | 0.76 | 56.0 | 3.26e-01 | 87.0% | 9.5% |
| 3679700 | 601.33.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain | 0.75 | 66.0 | 4.82e-01 | 100.0% | 38.3% |
| 2323818 | 1191.1.1.1 ↗ | alpha duplicates or obligate multimers › UPF0253 protein YaeP › UPF0253 protein YaeP › UPF0253 protein YaeP › UPF0253 | 0.75 | 63.0 | 5.41e-01 | 91.3% | 64.3% |
| 4426202 | 109.4.1.1298 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fes1, PF28415 | 0.74 | 60.0 | 3.66e-01 | 97.8% | 14.6% |
| 3973389 | 109.4.1.1248 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF2753 | 0.72 | 66.0 | 4.72e-01 | 100.0% | 71.2% |
| 3520435 | 611.3.1.1 ↗ | alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Med26 | 0.72 | 65.0 | 4.55e-01 | 100.0% | 78.6% |
| 4129436 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.70 | 58.0 | 4.44e-01 | 93.5% | 40.0% |
| 4058363 | 611.3.1.8 ↗ | alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Arm | 0.70 | 61.0 | 4.60e-01 | 97.8% | 70.9% |
| 3824655 | 109.4.1.361 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NPH3 | 0.70 | 58.0 | 4.26e-01 | 89.1% | 60.9% |
| 3495261 | 109.4.1.1844 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_10, TPR_12 | 0.70 | 59.0 | 3.38e-01 | 93.5% | 9.7% |
| 3438255 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.70 | 64.0 | 5.33e-01 | 100.0% | 88.0% |
| 3464517 | 3562.1.1.11 ↗ | alpha bundles › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › PGG | 0.70 | 54.0 | 3.61e-01 | 87.0% | 23.1% |
| 3894562 | 611.3.1.0 ↗ | alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.70 | 62.0 | 4.60e-01 | 97.8% | 70.9% |
| 4610045 | 109.4.1.207 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 | 0.69 | 60.0 | 3.91e-01 | 95.7% | 54.4% |
| 4928483 | 101.1.3.36 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_23 | 0.69 | 58.0 | 4.42e-01 | 93.5% | 40.8% |
| 3933449 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.68 | 50.0 | 4.06e-01 | 80.4% | 75.6% |
| 3225544 | 4006.1.1.0 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain | 0.68 | 57.0 | 4.37e-01 | 93.5% | 42.0% |
| 5082352 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.68 | 53.0 | 3.79e-01 | 97.8% | 28.3% |
| 3215046 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.67 | 57.0 | 4.14e-01 | 97.8% | 83.0% |
| 4100012 | 327.13.1.5 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › SpoIIIAH | 0.67 | 55.0 | 4.08e-01 | 93.5% | 35.6% |
| 3712939 | 109.4.1.32 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G | 0.67 | 58.0 | 3.47e-01 | 100.0% | 23.3% |
| 3257797 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.66 | 50.0 | 3.17e-01 | 87.0% | 16.6% |
| 3301922 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.66 | 53.0 | 2.96e-01 | 95.7% | 7.1% |
| 4293733 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.66 | 59.0 | 4.49e-01 | 100.0% | 43.8% |
| 3619200 | 192.15.1.76 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › CUPID | 0.65 | 48.0 | 3.42e-01 | 82.6% | 38.7% |
| 3251379 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.65 | 54.0 | 4.38e-01 | 93.5% | 49.4% |
| 3718498 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.65 | 53.0 | 4.27e-01 | 93.5% | 46.7% |
| 3731767 | 109.4.1.123 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › U3_assoc_6 | 0.65 | 56.0 | 3.29e-01 | 100.0% | 21.1% |
| 3684830 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.65 | 58.0 | 4.46e-01 | 100.0% | 46.0% |
| 4113259 | 2004.1.1.470 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD, UvrD-helicase, UvrD_C | 0.64 | 53.0 | 2.86e-01 | 95.7% | 7.5% |
| 3604531 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.64 | 52.0 | 3.81e-01 | 93.5% | 33.6% |
| 3314289 | 109.4.1.361 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NPH3 | 0.64 | 51.0 | 3.33e-01 | 89.1% | 21.0% |
| 4027114 | 3331.1.1.8 ↗ | a+b two layers › Uncharacterized protein yibL › Uncharacterized protein yibL › Uncharacterized protein yibL › RRP36 | 0.63 | 52.0 | 3.80e-01 | 100.0% | 33.3% |
| 4405865 | 109.4.1.923 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › AEP1 | 0.61 | 46.0 | 2.76e-01 | 89.1% | 20.0% |
| 5011233 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.60 | 50.0 | 3.72e-01 | 100.0% | 35.2% |
| 3518386 | 192.1.1.0 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain | 0.60 | 47.0 | 4.14e-01 | 93.5% | 66.7% |
| 3278856 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.59 | 48.0 | 4.70e-01 | 93.5% | 86.0% |
| 4300897 | 5094.1.1.1 ↗ | a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › OmpH | 0.58 | 46.0 | 3.40e-01 | 93.5% | 32.3% |
| 3816257 | 109.27.1.3 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › NPH3 | 0.58 | 47.0 | 3.40e-01 | 100.0% | 71.6% |
| 3813020 | 109.4.1.546 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Ecm29 | 0.56 | 47.0 | 2.86e-01 | 100.0% | 19.7% |
| 3702476 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 41.0 | 2.57e-01 | 100.0% | 12.8% |
| 4124331 | 192.15.1.76 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › CUPID | 0.54 | 45.0 | 3.55e-01 | 100.0% | 47.3% |
| 3627622 | 2004.1.1.17 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head | 0.51 | 39.0 | 2.21e-01 | 93.5% | 12.7% |
D2
medium
residues 1-52
Domain cluster:
representative