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OR296439.1__WLZ21164.1__C341T2LP_00018__00018

Bact-Vir

OR296439.1__WLZ21164.1__C341T2LP_00018__00018

Identity

Accession:
OR296439 ↗
Kingdom:
phage

Quality

86.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 67-167
PDB
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.71 48.0 5.04e-01 91.1% 76.7%
2zzeA03 2.40.30.130 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.68 49.0 5.00e-01 90.1% 77.6%
1wosA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.68 42.0 4.57e-01 76.2% 74.4%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.67 50.0 5.48e-01 90.1% 100.0%
3h7tA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.66 48.0 4.64e-01 75.2% 74.8%
7pzoA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.66 47.0 4.88e-01 75.2% 87.5%
2nwaA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.66 44.0 4.97e-01 96.0% 92.0%
2v31A01 2.40.30.180 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Ubiquitin-activating enzyme E1, FCCH domain 0.65 51.0 5.26e-01 90.1% 87.6%
6hhuA01 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 42.0 4.72e-01 76.2% 87.2%
4fkeA01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.63 44.0 3.43e-01 81.2% 33.2%
5hmaA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 42.0 4.48e-01 75.2% 79.3%
2eqnA01 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.63 47.0 5.06e-01 82.2% 93.1%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.63 48.0 5.01e-01 82.2% 98.9%
2ra1A04 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 44.0 4.51e-01 79.2% 75.3%
3nziA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 40.0 4.03e-01 75.2% 62.3%
4kbxA01 2.40.37.30 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › 0.63 43.0 3.39e-01 83.2% 31.9%
2j5uA02 2.40.10.340 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 1 0.62 47.0 5.06e-01 90.1% 95.2%
4aq1A01 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 40.0 4.18e-01 79.2% 71.3%
3kyfA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.61 46.0 4.37e-01 97.0% 67.5%
1l1jA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 41.0 3.96e-01 75.2% 60.2%
4kktA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.59 48.0 4.77e-01 90.1% 97.1%
3a35A02 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.59 45.0 4.74e-01 90.1% 91.3%
1ep3B01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 49.0 4.96e-01 93.1% 100.0%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.58 45.0 4.20e-01 98.0% 68.0%
2r6hA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 48.0 4.29e-01 92.1% 99.3%
1vw3C01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 48.0 4.46e-01 93.1% 71.8%
5tr9A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 47.0 4.86e-01 92.1% 97.9%
4pbdA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 41.0 4.17e-01 78.2% 91.2%
1ja1A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 47.0 4.44e-01 93.1% 95.9%
4wz9A01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.56 43.0 3.39e-01 82.2% 41.6%
3op1A02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.56 48.0 4.72e-01 98.0% 100.0%
1ddgA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 47.0 4.52e-01 93.1% 96.5%
5gxuB01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 46.0 4.41e-01 93.1% 95.1%
4beuA01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.55 46.0 3.91e-01 92.1% 58.9%
1n08A00 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.55 49.0 4.29e-01 100.0% 90.3%
3fgeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 48.0 4.07e-01 98.0% 68.6%
2qtlA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 44.0 4.36e-01 89.1% 100.0%
2r6vA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 47.0 4.07e-01 98.0% 70.7%
2rt3A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.54 38.0 3.90e-01 74.3% 76.3%
4l82A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 47.0 4.09e-01 98.0% 72.4%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 36.0 4.26e-01 86.1% 100.0%
3qnfC01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.53 39.0 3.15e-01 82.2% 39.0%
5e7gA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 38.0 4.03e-01 78.2% 87.8%
1i0rA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 45.0 3.95e-01 98.0% 72.7%
2avwD01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 39.0 3.55e-01 81.2% 83.0%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.51 37.0 3.23e-01 74.3% 74.2%
1wxrA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 44.0 3.26e-01 94.1% 91.1%
6vilA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.51 37.0 3.30e-01 76.2% 73.8%
3zn6A02 2.60.40.3410 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 37.0 3.93e-01 80.2% 97.7%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5079927 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 54.0 5.72e-01 81.2% 100.0%
3210962 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 56.0 5.83e-01 89.1% 100.0%
3974181 1.1.5.88 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PF29489 0.68 47.0 4.97e-01 97.0% 81.1%
5056905 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.67 52.0 5.47e-01 82.2% 100.0%
4936008 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.66 52.0 5.38e-01 83.2% 100.0%
4995639 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.66 50.0 5.49e-01 90.1% 100.0%
3991400 7526.1.1.0 a/b three-layered sandwiches › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 0.66 57.0 4.16e-01 99.0% 35.8%
3680041 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.66 56.0 5.17e-01 92.1% 76.2%
3720023 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 50.0 5.09e-01 82.2% 99.0%
5023511 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.65 55.0 5.24e-01 90.1% 100.0%
3256920 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 55.0 5.16e-01 92.1% 100.0%
4262187 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.65 53.0 5.44e-01 90.1% 91.6%
4638448 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.65 51.0 5.04e-01 83.2% 80.0%
4209527 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.64 50.0 4.91e-01 83.2% 81.8%
3237729 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 53.0 5.25e-01 89.1% 86.7%
4678134 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.64 53.0 5.35e-01 90.1% 89.0%
4211588 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 58.0 3.72e-01 100.0% 30.8%
4066625 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.63 53.0 4.91e-01 92.1% 73.8%
3405606 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.62 43.0 3.33e-01 82.2% 32.7%
3387966 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 49.0 5.24e-01 90.1% 100.0%
3595505 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.61 48.0 3.58e-01 83.2% 49.0%
3227251 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 50.0 4.82e-01 90.1% 84.3%
4608778 1.1.7.107 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25965 0.61 51.0 4.80e-01 90.1% 78.3%
1871771 1.1.5.43 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › MrkH_YcgR_like 0.60 43.0 4.23e-01 100.0% 68.5%
3402496 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.60 42.0 3.31e-01 81.2% 32.9%
3408808 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.60 44.0 3.47e-01 82.2% 35.9%
3235756 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.60 46.0 3.61e-01 82.2% 42.3%
3620073 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.59 41.0 3.22e-01 82.2% 33.5%
3224730 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 49.0 4.80e-01 92.1% 91.8%
3699284 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.59 46.0 3.52e-01 83.2% 45.0%
4856461 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.59 43.0 3.35e-01 80.2% 34.2%
3163913 1.1.5.16 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › MreC 0.59 44.0 3.38e-01 97.0% 33.3%
4943219 205.1.1.123 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer2_BFD 0.59 45.0 3.94e-01 95.0% 53.5%
3568250 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.58 45.0 3.45e-01 82.2% 41.3%
4400928 1.1.7.10 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.58 49.0 4.63e-01 95.0% 99.2%
4966449 1.1.13.72 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › CBS 0.58 41.0 4.19e-01 98.0% 77.9%
3509982 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.57 44.0 3.63e-01 82.2% 51.4%
3256977 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.57 44.0 3.34e-01 82.2% 38.0%
4033714 1.1.13.7 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tail 0.57 46.0 4.77e-01 99.0% 93.7%
3598670 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.57 43.0 3.51e-01 82.2% 42.5%
3584940 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.57 44.0 3.42e-01 82.2% 40.0%
3994570 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.57 43.0 3.86e-01 82.2% 63.4%
3416094 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.56 43.0 3.40e-01 82.2% 41.4%
3936582 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.56 44.0 3.39e-01 82.2% 42.3%
3181266 1.1.7.24 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 0.56 46.0 4.49e-01 92.1% 97.4%
3390411 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.56 43.0 3.32e-01 82.2% 38.7%
4032514 1.1.5.16 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › MreC 0.55 45.0 3.61e-01 90.1% 78.5%
3524352 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.54 41.0 3.29e-01 82.2% 39.5%
3268937 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 44.0 4.35e-01 90.1% 87.6%
5027245 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.53 34.0 3.74e-01 99.0% 80.0%
4629425 11.1.1.1369 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1410 0.53 40.0 4.08e-01 79.2% 84.2%
3238181 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.53 41.0 3.22e-01 82.2% 41.4%
3281795 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 41.0 3.51e-01 84.2% 54.1%
4967745 1.1.9.56 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30793 0.53 47.0 4.59e-01 100.0% 100.0%
3944005 1.1.7.87 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.53 46.0 4.27e-01 100.0% 76.7%
3505711 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.52 36.0 3.95e-01 89.1% 84.7%
4027873 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.51 37.0 3.40e-01 78.2% 72.9%
4011072 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 37.0 3.22e-01 76.2% 81.2%
3392702 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.50 38.0 3.05e-01 82.2% 40.9%
4001868 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 37.0 3.60e-01 77.2% 77.3%
D2 medium residues 20-61_171-232
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3oA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 23.0 2.81e-01 76.0% 62.9%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3977754 1.1.8.21 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Baseplate_J 0.56 39.0 4.11e-01 73.1% 83.2%