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OR296439.1__WLZ21226.1__C341T2LP_00080__00080

Bact-Vir

OR296439.1__WLZ21226.1__C341T2LP_00080__00080

Identity

Accession:
OR296439 ↗
Kingdom:
phage

Quality

88.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 39-117
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4c92G00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.81 57.0 5.88e-01 73.4% 84.0%
4f7uF00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.78 54.0 5.59e-01 70.9% 82.2%
4c92F00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.78 55.0 5.63e-01 73.4% 84.4%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.78 54.0 5.74e-01 70.9% 88.2%
3pggA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.78 53.0 5.40e-01 70.9% 82.1%
1m5q101 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.75 52.0 5.57e-01 72.2% 83.8%
1b34B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.75 52.0 5.39e-01 73.4% 77.0%
1d3bC00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.75 51.0 5.38e-01 70.9% 84.5%
3jb9F00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.75 51.0 5.07e-01 70.9% 73.2%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.74 43.0 5.35e-01 70.9% 95.8%
4m78N00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.74 50.0 5.28e-01 70.9% 77.5%
4dovA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.64 52.0 4.27e-01 92.4% 75.8%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 43.0 4.68e-01 70.9% 96.9%
1d3bB00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 53.0 5.33e-01 96.2% 90.1%
4jglA00 2.40.128.530 Mainly Beta › Beta Barrel › Lipocalin › 0.60 51.0 4.17e-01 94.9% 94.7%
2qf4A02 2.40.10.350 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 0.60 37.0 3.52e-01 77.2% 53.8%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.57 39.0 4.01e-01 70.9% 78.4%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 32.0 3.49e-01 92.4% 71.0%
1u04A04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 41.0 3.06e-01 87.3% 91.5%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3502085 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.84 79.0 7.24e-01 100.0% 89.0%
150686 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.80 55.0 6.19e-01 70.9% 96.7%
3995481 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.79 54.0 4.96e-01 70.9% 62.0%
3598832 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 53.0 5.83e-01 70.9% 92.3%
4990442 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.78 54.0 5.44e-01 72.2% 77.5%
3691572 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.78 53.0 5.36e-01 70.9% 77.5%
5000810 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.78 53.0 5.22e-01 70.9% 70.6%
3167103 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.78 53.0 4.90e-01 70.9% 71.0%
3712122 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.78 55.0 5.37e-01 73.4% 71.8%
3617549 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.77 53.0 4.80e-01 70.9% 59.0%
4015537 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 54.0 5.45e-01 72.2% 78.2%
4983255 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.77 54.0 5.52e-01 72.2% 80.0%
3593314 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 54.0 5.46e-01 73.4% 76.2%
3396989 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.77 54.0 4.93e-01 72.2% 61.0%
3715818 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.77 53.0 4.94e-01 70.9% 63.2%
4932286 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.77 53.0 5.55e-01 72.2% 83.6%
4027625 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 45.0 5.53e-01 70.9% 94.0%
3606838 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 53.0 4.94e-01 72.2% 64.2%
5075579 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 53.0 5.34e-01 73.4% 77.5%
4029204 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.75 52.0 5.06e-01 70.9% 70.6%
4016022 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 52.0 5.38e-01 72.2% 80.0%
5036497 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.75 51.0 5.17e-01 70.9% 75.0%
4957377 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.75 45.0 4.95e-01 72.2% 74.6%
4876565 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.75 51.0 4.94e-01 70.9% 66.7%
5026934 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.75 52.0 5.24e-01 72.2% 76.2%
4010995 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 52.0 5.34e-01 72.2% 92.0%
3863382 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 53.0 5.56e-01 73.4% 84.3%
4948069 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 55.0 5.70e-01 78.5% 88.0%
3598052 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 56.0 5.36e-01 79.7% 80.0%
4876572 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.74 51.0 4.98e-01 72.2% 69.3%
1549365 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.74 55.0 5.42e-01 78.5% 84.3%
3596655 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 53.0 4.21e-01 77.2% 66.3%
3503815 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.72 50.0 4.92e-01 84.8% 67.1%
3622055 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.71 49.0 4.84e-01 84.8% 67.1%
4485354 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.71 49.0 4.62e-01 70.9% 63.8%
3577505 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 48.0 4.77e-01 86.1% 65.9%
3237262 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.71 49.0 4.40e-01 84.8% 51.8%
409205 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.71 58.0 5.66e-01 93.7% 82.4%
3326132 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 41.0 4.43e-01 73.4% 73.8%
3463181 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 41.0 4.36e-01 73.4% 70.0%
3313119 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.66 41.0 4.14e-01 73.4% 61.3%
3911065 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 52.0 5.26e-01 98.7% 85.0%
3612184 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 41.0 4.56e-01 75.9% 83.3%
3993250 4.1.1.333 beta barrels › SH3 › SH3 › SH3 › PF29330 0.65 39.0 4.40e-01 70.9% 83.6%
5029405 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.65 41.0 4.74e-01 96.2% 92.7%
3707347 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 39.0 4.43e-01 70.9% 85.5%
3308604 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.64 42.0 4.31e-01 72.2% 70.7%
3659149 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 44.0 4.01e-01 73.4% 68.6%
3429682 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 38.0 3.96e-01 73.4% 65.3%
3561707 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 45.0 4.24e-01 89.9% 63.0%
3168996 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.61 56.0 4.72e-01 100.0% 75.2%
3815480 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 41.0 4.41e-01 75.9% 87.7%
3832128 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 46.0 4.37e-01 91.1% 83.2%
3662072 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 47.0 4.11e-01 94.9% 61.7%
4405204 1.1.12.1 beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth 0.53 36.0 3.67e-01 70.9% 100.0%
4965158 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.52 32.0 3.32e-01 89.9% 64.0%
4949861 223.1.1.23 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 0.52 39.0 3.06e-01 79.7% 76.4%
D2 high residues 130-181
PDB
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mdnD00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.65 45.0 2.95e-01 73.1% 61.0%
2r7rA04 3.30.70.2480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 45.0 3.27e-01 75.0% 77.1%
1uyvA01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.61 51.0 3.30e-01 98.1% 90.8%
4tm5A01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.58 47.0 3.50e-01 90.4% 42.4%
1gh9A00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.57 48.0 4.39e-01 96.2% 81.7%
4dqnA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.56 45.0 3.24e-01 90.4% 35.4%
2hpuA02 3.30.70.2050 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 44.0 4.26e-01 92.3% 84.1%
7c2fB01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.56 41.0 3.57e-01 80.8% 66.3%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.56 46.0 3.86e-01 94.2% 89.1%
1xffA00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.56 37.0 2.41e-01 96.2% 15.1%
3vz9B00 3.30.457.50 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 0.55 42.0 3.42e-01 84.6% 52.4%
2avxA00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.55 43.0 3.09e-01 90.4% 72.5%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.54 42.0 2.97e-01 100.0% 26.7%
3bk2A03 3.10.20.580 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 40.0 3.35e-01 96.2% 46.5%
3in6A02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 35.0 2.77e-01 73.1% 57.3%
1pqzA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.50 42.0 3.08e-01 92.3% 96.4%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3415618 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.67 41.0 3.93e-01 96.2% 53.3%
3726852 2004.1.1.685 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › HET 0.61 45.0 2.90e-01 100.0% 16.8%
3726614 2007.1.1.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like 0.60 42.0 2.45e-01 73.1% 24.9%
5076776 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 38.0 3.35e-01 94.2% 41.7%
4026734 2003.1.5.73 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.58 47.0 3.07e-01 94.2% 26.7%
3407580 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.56 38.0 3.47e-01 71.2% 60.0%
3693870 11.8.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like 0.56 43.0 3.29e-01 88.5% 63.0%
3435593 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.56 38.0 2.97e-01 71.2% 47.3%
4020038 7508.1.1.0 a/b three-layered sandwiches › O-glucosyltransferase rumi N-terminal domain › O-glucosyltransferase rumi N-terminal domain › O-glucosyltransferase rumi N-terminal domain 0.55 40.0 2.91e-01 100.0% 26.7%
908 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.55 34.0 2.93e-01 80.8% 40.0%
3470968 109.1.1.0 alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C 0.54 43.0 2.84e-01 86.5% 79.0%
4995409 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.54 40.0 2.72e-01 88.5% 53.2%
4978525 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.53 42.0 2.81e-01 96.2% 50.6%
4158495 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.52 36.0 3.13e-01 75.0% 84.4%
3801221 245.1.1.0 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.52 44.0 3.58e-01 98.1% 50.5%
3164638 2006.1.1.37 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › S6PP+Hydrolase_3 0.52 38.0 2.50e-01 82.7% 95.8%
5067915 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.52 40.0 2.75e-01 98.1% 50.8%
3995005 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.51 43.0 3.69e-01 100.0% 57.6%
3388439 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.51 45.0 2.87e-01 100.0% 49.6%
4015645 236.1.1.0 beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain 0.50 38.0 2.80e-01 96.2% 72.3%
4065862 4020.1.1.1 a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › Aminotran_4 0.50 41.0 2.93e-01 90.4% 33.3%