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OR296439.1__WLZ21244.1__C341T2LP_00098__00098

Bact-Vir

OR296439.1__WLZ21244.1__C341T2LP_00098__00098

Identity

Accession:
OR296439 ↗
Kingdom:
phage

Quality

86.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-52
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qtfA02 6.10.250.2860 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.81 55.0 5.78e-01 71.2% 78.7%
2jdiG01 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.80 55.0 5.20e-01 71.2% 67.2%
4fvmA06 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.79 54.0 5.59e-01 71.2% 77.1%
3tklB01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.78 54.0 5.08e-01 71.2% 61.3%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.77 52.0 5.07e-01 71.2% 63.8%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.76 52.0 4.11e-01 71.2% 36.3%
3a98A02 1.20.1270.350 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Dedicator of cytokinesis N-terminal subdomain 0.75 63.0 5.38e-01 96.2% 83.9%
6xz3A01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.75 59.0 4.58e-01 88.5% 94.9%
1sr2A00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.72 61.0 4.78e-01 98.1% 53.4%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.72 45.0 4.08e-01 71.2% 46.5%
5b1aC01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.71 48.0 4.45e-01 71.2% 64.7%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.70 48.0 4.16e-01 71.2% 51.9%
1d2mA03 6.10.140.240 Special › Helix non-globular › Helix Hairpins › 0.70 56.0 5.18e-01 88.5% 87.9%
7c1iA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.70 59.0 4.90e-01 100.0% 59.0%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.69 46.0 4.33e-01 71.2% 54.7%
2ip6A00 1.20.1440.140 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.69 61.0 5.16e-01 100.0% 87.4%
2d54A02 2.170.220.10 Mainly Beta › Beta Complex › Methionyl-trna Synthetase; domain 2 › 0.69 45.0 3.55e-01 73.1% 31.5%
1hy0A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.68 59.0 4.42e-01 100.0% 59.9%
6h5hA00 1.10.150.110 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like 0.68 52.0 4.79e-01 86.5% 87.3%
4xpwA00 1.20.120.50 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like 0.68 56.0 4.33e-01 100.0% 55.0%
3b0xA01 1.10.150.110 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like 0.66 54.0 4.76e-01 100.0% 96.6%
2ptfB02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.63 42.0 4.17e-01 71.2% 68.4%
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 42.0 4.02e-01 71.2% 75.8%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.61 41.0 3.57e-01 71.2% 80.0%
2nr4A02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.61 40.0 4.00e-01 71.2% 69.0%
1vhnA02 1.10.1200.80 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Putative flavin oxidoreducatase; domain 2 0.55 42.0 3.97e-01 98.1% 69.0%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4219218 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.90 62.0 4.70e-01 71.2% 33.6%
3611216 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.87 60.0 4.33e-01 71.2% 28.5%
4945931 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.76 53.0 4.74e-01 71.2% 52.9%
4993688 632.15.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) 0.75 64.0 5.36e-01 100.0% 69.5%
4114337 632.2.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.74 66.0 5.82e-01 100.0% 82.7%
3989722 632.24.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › GBS CAMP factor C-terminal domain › GBS CAMP factor C-terminal domain 0.74 62.0 5.92e-01 100.0% 98.5%
3360337 192.17.1.0 alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.73 50.0 5.43e-01 71.2% 97.5%
4061582 632.7.1.32 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › Med15_M 0.71 62.0 5.53e-01 100.0% 82.7%
3551336 103.4.1.17 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Med15_M 0.71 61.0 5.48e-01 100.0% 84.0%
5041772 5069.1.3.0 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.70 47.0 3.79e-01 71.2% 70.5%
1549356 601.14.1.1 alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin › Hemerythrin 0.68 56.0 4.33e-01 100.0% 55.0%
3917245 632.6.1.6 alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Med15_M 0.66 54.0 5.05e-01 100.0% 94.3%
D2 high residues 56-105
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hh0A01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.69 58.0 5.28e-01 100.0% 75.0%
3ucsA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.68 55.0 4.61e-01 100.0% 53.5%
5i41B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.65 52.0 4.94e-01 100.0% 79.1%
2zhgA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.65 54.0 4.19e-01 100.0% 43.0%
3gp4B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.63 51.0 3.96e-01 100.0% 41.5%
6jgwA01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.63 51.0 3.95e-01 94.0% 42.1%
1ij5A03 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.63 52.0 3.95e-01 100.0% 38.9%
5tjjA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 45.0 4.06e-01 80.0% 58.9%
4b43A01 1.10.10.2480 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.62 50.0 4.69e-01 100.0% 77.9%
2damA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.62 45.0 4.23e-01 98.0% 62.7%
4r24B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.60 48.0 4.26e-01 100.0% 62.4%
1gd9A02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.60 51.0 3.38e-01 100.0% 99.6%
3i5gC02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.60 49.0 4.50e-01 100.0% 73.6%
2xkrA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.57 39.0 2.37e-01 76.0% 58.5%
3g7qA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.55 47.0 3.15e-01 100.0% 97.3%
2ds2D01 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.54 35.0 3.39e-01 70.0% 57.9%
1c0wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 40.0 3.68e-01 86.0% 67.1%
7t2sA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 42.0 3.10e-01 100.0% 96.6%
4paaA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 45.0 2.94e-01 100.0% 22.4%
1l1lA01 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.52 41.0 2.44e-01 94.0% 16.6%
2dt5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 42.0 3.75e-01 94.0% 63.0%
2iy9A00 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.52 40.0 2.63e-01 100.0% 48.5%
1on2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 39.0 3.61e-01 92.0% 72.2%
2ek5B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 40.0 3.32e-01 100.0% 52.3%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3281621 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.74 62.0 6.10e-01 96.0% 94.5%
3954117 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.72 61.0 5.23e-01 100.0% 61.2%
4682727 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.72 64.0 6.23e-01 100.0% 94.5%
4932995 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.71 59.0 5.96e-01 94.0% 100.0%
5064906 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.71 60.0 5.91e-01 98.0% 94.5%
3840108 101.1.9.95 alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF3972 0.70 61.0 5.79e-01 100.0% 86.7%
4101677 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.69 57.0 4.32e-01 100.0% 39.3%
4994568 101.1.9.36 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.69 59.0 5.79e-01 100.0% 94.5%
3966930 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.69 58.0 4.59e-01 100.0% 48.2%
3281871 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.68 57.0 4.44e-01 100.0% 45.0%
4933561 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.68 55.0 5.44e-01 94.0% 90.9%
4237129 101.1.2.238 alpha arrays › HTH › HTH › winged helix domain › DUF1376 0.68 49.0 3.83e-01 78.0% 37.3%
5047649 101.1.9.36 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.68 54.0 5.49e-01 94.0% 100.0%
3943951 101.1.9.45 alpha arrays › HTH › HTH › Putative DNA-binding domain › Phage_AlpA 0.68 59.0 5.44e-01 100.0% 83.1%
3955723 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.68 53.0 5.36e-01 90.0% 94.0%
3285399 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.67 52.0 5.24e-01 88.0% 92.0%
4096952 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.67 56.0 4.39e-01 100.0% 46.1%
3284505 101.1.9.36 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.67 54.0 4.33e-01 100.0% 47.0%
3289628 101.1.9.79 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_Rv1828 0.67 55.0 4.27e-01 100.0% 40.8%
4334333 101.1.9.1 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR,MerR-DNA-bind 0.66 55.0 4.10e-01 100.0% 37.9%
3281073 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.64 52.0 4.31e-01 100.0% 52.4%
2876157 101.1.9.105 alpha arrays › HTH › HTH › Putative DNA-binding domain › PF30176 0.64 53.0 5.26e-01 100.0% 98.1%
2442365 101.1.9.79 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_Rv1828 0.64 53.0 4.89e-01 100.0% 72.1%
3385701 101.1.9.95 alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF3972 0.64 53.0 5.24e-01 100.0% 92.7%
3286117 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.64 52.0 4.06e-01 100.0% 41.6%
3607656 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.63 52.0 4.39e-01 100.0% 56.8%
4948782 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.61 47.0 4.17e-01 86.0% 62.7%
4507097 3601.1.1.1 alpha complex topology › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Ad_Cy_reg 0.60 51.0 3.74e-01 100.0% 34.5%
4027085 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.60 48.0 4.61e-01 100.0% 88.9%
3197805 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.59 41.0 3.69e-01 96.0% 52.9%
4633347 101.1.9.8 alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.58 47.0 4.71e-01 98.0% 100.0%
4943120 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 47.0 3.86e-01 100.0% 57.0%
3366705 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.56 44.0 4.22e-01 100.0% 76.9%
3089531 101.1.9.19 alpha arrays › HTH › HTH › Putative DNA-binding domain › PUFD 0.56 43.0 3.44e-01 92.0% 76.3%
3288384 7579.1.1.6 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.56 44.0 2.82e-01 94.0% 85.6%
4640858 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.55 44.0 4.02e-01 100.0% 68.0%
4390858 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.55 44.0 4.45e-01 98.0% 100.0%
5022765 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 42.0 3.83e-01 86.0% 61.4%
5039516 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 40.0 3.50e-01 86.0% 56.5%
5007422 206.1.3.23 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RNA_ligase 0.54 40.0 2.67e-01 88.0% 72.0%
4090010 101.1.2.122 alpha arrays › HTH › HTH › winged helix domain › CSN8_PSD8_EIF3K 0.53 38.0 3.77e-01 86.0% 74.5%
4951637 101.1.15.0 alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.50 42.0 3.18e-01 100.0% 35.7%
4012859 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 43.0 3.43e-01 100.0% 64.8%
3518542 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.50 37.0 2.65e-01 86.0% 26.1%