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OR339795.1__WNL49392.1__X__00043

Bact-Vir

OR339795.1__WNL49392.1__X__00043

Identity

Accession:
OR339795 ↗
Kingdom:
phage

Quality

59.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Punavirus› Escherichia_phage_phi456

TaxID: 3075925

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-116
PDB
Domain cluster: rep: OM835951.1__UNI73656.1__KP12_246__00246__D220-313
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10544.16 best T5orf172 29.3 1.40e-06 86.4% 85.7%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jmlA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.65 37.0 4.26e-01 79.1% 76.5%
3gruA02 1.10.8.100 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain 0.56 37.0 4.14e-01 86.4% 87.2%
2dt9A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 37.0 4.23e-01 85.5% 96.2%
1lzwA00 3.30.1390.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS 0.54 37.0 4.04e-01 85.5% 84.6%
4oloB00 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.54 38.0 4.21e-01 88.2% 95.2%
6y48D01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 42.0 3.14e-01 86.4% 92.6%
4yjmC00 3.30.1390.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS 0.53 36.0 4.04e-01 85.5% 91.6%
3uoxB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 43.0 3.22e-01 91.8% 96.9%
2epgB00 3.90.1860.10 Alpha Beta › Alpha-Beta Complex › tRNA-splicing ligase RtcB › tRNA-splicing ligase RtcB 0.51 43.0 2.97e-01 97.3% 77.0%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4016088 821.1.1.3 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 0.78 66.0 6.78e-01 89.1% 99.0%
3735748 821.1.1.3 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 0.75 64.0 5.44e-01 90.9% 62.9%
3781133 304.24.1.7 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › V_ATPase_I 0.64 39.0 4.46e-01 87.3% 82.5%
3566248 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.59 37.0 4.10e-01 87.3% 76.7%
3397043 306.5.1.0 ↗ a+b two layers › Glucose permease domain IIB-like › GTP cyclohydrolase I feedback regulatory protein, GFRP › GTP cyclohydrolase I feedback regulatory protein, GFRP 0.59 39.0 4.44e-01 99.1% 92.5%
5051463 304.54.1.0 ↗ a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like 0.57 40.0 4.53e-01 90.9% 100.0%
4107410 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.57 35.0 4.08e-01 85.5% 89.3%
4140109 304.11.1.0 ↗ a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.56 36.0 4.29e-01 89.1% 96.0%
4285070 304.24.1.4 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › RF3_C 0.56 35.0 3.95e-01 85.5% 83.7%
3515878 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.56 34.0 3.92e-01 79.1% 88.0%
4932198 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.55 35.0 3.53e-01 86.4% 61.7%
5047263 304.24.1.3 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.55 34.0 4.02e-01 86.4% 92.0%
4398897 308.1.1.2 ↗ a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.54 38.0 3.98e-01 86.4% 79.6%
435725 308.1.1.2 ↗ a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.54 37.0 3.84e-01 86.4% 73.3%
3392056 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.54 26.0 2.88e-01 100.0% 55.3%
4660026 308.1.1.2 ↗ a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.54 36.0 3.94e-01 85.5% 81.7%
3838034 308.1.1.2 ↗ a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.53 36.0 3.98e-01 86.4% 85.6%
3941725 304.28.1.3 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SecD-TM1 0.53 37.0 4.16e-01 91.8% 94.1%
1697864 304.24.1.3 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.53 35.0 3.93e-01 89.1% 90.2%
3493366 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.51 32.0 3.76e-01 84.5% 98.6%
5080852 304.128.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.51 35.0 3.99e-01 90.9% 92.9%
3506713 304.107.1.1 ↗ a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › GCV_T 0.51 45.0 3.47e-01 100.0% 76.9%
D2 high residues 157-268
PDB