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OR339795.1__WNL49427.1__X__00078

Bact-Vir

OR339795.1__WNL49427.1__X__00078

Identity

Accession:
OR339795 ↗
Kingdom:
phage

Quality

87.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Punavirus› Escherichia_phage_phi456

TaxID: 3075925

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 2-72
PDB
Domain cluster: rep: LacPavin_0818_WC55_scaffold_2946_prodigal-single.1__X__X__00057__D2-52
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02604.27 best PhdYeFM_antitox 46.9 2.60e-12 91.5% 66.2%
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2odkA00 3.40.1620.10 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain 0.89 61.0 7.16e-01 70.4% 100.0%
7kfuC02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.73 45.0 3.04e-01 95.8% 18.9%
3e6mA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 40.0 3.15e-01 71.8% 27.4%
4bl8B03 3.30.1360.230 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Sufu, C-terminal domain 0.69 47.0 3.82e-01 70.4% 56.1%
4p22A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.68 47.0 3.33e-01 80.3% 23.3%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 49.0 4.28e-01 100.0% 60.6%
1wtjA02 3.30.1370.60 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain 0.57 43.0 3.31e-01 85.9% 90.1%
2ouxA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.57 43.0 3.62e-01 84.5% 89.9%
1yyvB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 37.0 3.32e-01 70.4% 44.6%
2gs8A02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.54 37.0 3.06e-01 73.2% 69.3%
2rc3C00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.51 36.0 2.99e-01 73.2% 66.4%
6xzqA01 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.51 36.0 2.75e-01 73.2% 45.1%
2yziB00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.51 36.0 2.94e-01 73.2% 63.0%
1o50A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.50 39.0 3.22e-01 87.3% 87.9%
1k4yA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 40.0 2.48e-01 91.5% 97.8%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
397699 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.93 86.0 8.62e-01 98.6% 94.4%
3944219 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.93 86.0 8.74e-01 98.6% 97.1%
4611720 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.90 72.0 6.84e-01 84.5% 73.8%
4992373 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.88 67.0 6.21e-01 80.3% 65.9%
2629018 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.86 68.0 6.18e-01 84.5% 64.1%
4358836 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.85 68.0 6.51e-01 84.5% 76.2%
2649940 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.84 65.0 7.03e-01 84.5% 98.3%
3282490 4267.1.1.0 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like 0.82 65.0 6.95e-01 84.5% 100.0%
134503 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.80 61.0 5.64e-01 84.5% 63.7%
3281080 4267.1.1.0 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like 0.80 58.0 6.32e-01 76.1% 91.7%
3287302 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.80 62.0 6.27e-01 88.7% 82.9%
3952396 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.69 60.0 6.10e-01 93.0% 97.1%
5033276 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.61 52.0 4.10e-01 94.4% 70.9%
4080548 223.1.1.176 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › KaiB 0.61 52.0 4.34e-01 93.0% 95.0%
4938640 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.60 51.0 3.53e-01 94.4% 46.3%
3771989 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.59 46.0 3.66e-01 100.0% 43.7%
5036485 3688.1.1.0 ↗ a+b two layers › N-terminal subdomain in UbiD middle domain › N-terminal subdomain in UbiD middle domain › N-terminal subdomain in UbiD middle domain 0.57 38.0 3.80e-01 74.6% 66.7%
3718200 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.54 48.0 4.03e-01 100.0% 57.6%
4935223 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.54 37.0 3.00e-01 71.8% 57.8%
60060 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 39.0 2.83e-01 83.1% 63.8%
4996058 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.52 45.0 3.89e-01 98.6% 65.2%
5024761 3688.1.1.1 ↗ a+b two layers › N-terminal subdomain in UbiD middle domain › N-terminal subdomain in UbiD middle domain › N-terminal subdomain in UbiD middle domain › UbiD_N 0.51 42.0 3.96e-01 100.0% 82.1%
5025339 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.50 35.0 3.01e-01 73.2% 66.7%