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OR348818.1__WNO24182.1__Scuro_21__00021

Bact-Vir

OR348818.1__WNO24182.1__Scuro_21__00021

Identity

Accession:
OR348818 ↗
Kingdom:
phage

Quality

84.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 49-102
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1goiB03 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.85 66.0 6.80e-01 87.0% 88.2%
1wvvB01 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.84 66.0 6.96e-01 87.0% 93.8%
1ed7A00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.71 54.0 5.77e-01 83.3% 100.0%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.65 44.0 4.38e-01 81.5% 66.1%
3frnA03 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.65 42.0 4.31e-01 75.9% 70.6%
2jiiA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 46.0 3.58e-01 75.9% 38.2%
3aiiA02 2.40.240.100 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › 0.61 47.0 4.53e-01 85.2% 98.4%
2iz4A01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.61 36.0 3.78e-01 79.6% 61.2%
2r2aA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 46.0 3.27e-01 87.0% 91.1%
3e1sA04 2.30.30.940 Mainly Beta › Roll › SH3 type barrels. › 0.60 45.0 4.21e-01 83.3% 68.1%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 39.0 3.79e-01 77.8% 59.0%
2hz7A05 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.58 43.0 3.27e-01 79.6% 40.6%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.56 44.0 2.85e-01 96.3% 50.3%
2ls0101 2.40.50.670 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Target recognition domain of lytic exoenzyme 0.56 39.0 3.22e-01 77.8% 39.5%
6guuA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 38.0 3.89e-01 75.9% 74.1%
2yfsA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 38.0 2.26e-01 77.8% 47.7%
2xxlA01 3.30.1640.30 Alpha Beta › 2-Layer Sandwich › mini-chromosome maintenance (MCM) complex, chain A, domain 1 › 0.53 36.0 3.29e-01 74.1% 89.7%
1a1xA00 2.40.15.10 Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 0.52 39.0 3.15e-01 81.5% 90.6%
5ngyA01 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.52 43.0 3.53e-01 96.3% 72.1%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 42.0 3.80e-01 92.6% 68.0%
1r5bA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 38.0 3.21e-01 88.9% 88.2%
2qe8A00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 41.0 2.56e-01 92.6% 46.0%
1a3wB03 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.51 38.0 3.24e-01 85.2% 78.4%
3dsoA00 2.40.10.300 Mainly Beta › Beta Barrel › Thrombin, subunit H › Copper resistance protein K 0.50 41.0 3.91e-01 94.4% 83.3%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3982481 64.3.1.0 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.89 75.0 7.02e-01 90.7% 86.2%
3241120 64.3.1.4 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › Tmp39 0.79 57.0 5.34e-01 75.9% 67.7%
4976701 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 49.0 5.14e-01 72.2% 70.0%
3057047 64.3.1.0 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.78 62.0 5.67e-01 87.0% 92.9%
4197640 64.3.1.0 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.76 60.0 5.48e-01 85.2% 91.4%
5021656 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.71 48.0 4.99e-01 87.0% 76.0%
3198697 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.66 51.0 3.13e-01 83.3% 15.3%
185266 3174.2.1.1 beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA 0.65 43.0 4.40e-01 77.8% 71.2%
2464247 4.8.1.2 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.61 39.0 3.66e-01 75.9% 53.0%
3792511 206.1.1.72 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal 0.61 46.0 2.83e-01 83.3% 13.0%
4580145 1.1.8.21 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Baseplate_J 0.60 46.0 3.99e-01 83.3% 57.6%
3198325 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.59 45.0 2.78e-01 81.5% 14.3%
4949535 12.5.1.0 beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.59 46.0 3.45e-01 92.6% 89.0%
5076337 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 44.0 4.26e-01 81.5% 80.0%
3969735 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 43.0 4.03e-01 85.2% 94.3%
184903 2004.1.1.129 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Zot 0.56 41.0 3.01e-01 87.0% 90.1%
1513036 239.1.1.5 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C 0.55 40.0 3.27e-01 79.6% 50.5%
3776456 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.54 34.0 2.94e-01 72.2% 40.5%
3999004 239.3.1.0 beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain 0.53 45.0 2.83e-01 94.4% 37.6%
4933326 101.1.2.70 alpha arrays › HTH › HTH › winged helix domain › PqqD 0.52 38.0 3.23e-01 77.8% 69.3%
3832887 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.52 37.0 3.24e-01 75.9% 74.7%
4962916 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.51 37.0 2.61e-01 79.6% 44.7%
4928472 101.1.2.70 alpha arrays › HTH › HTH › winged helix domain › PqqD 0.50 36.0 3.21e-01 77.8% 76.2%
D2 medium residues 103-179
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF27114.1 best Phage_tail_beta 40.7 3.40e-10 85.7% 86.4%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ej9A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.53 44.0 3.33e-01 90.9% 64.9%
5cfvA01 3.30.700.10 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin 0.53 40.0 3.65e-01 83.1% 93.5%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2581318 3856.1.2.1 beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › tailspike protein Orf211 N-terminal domain › Phage_tail_beta 0.88 69.0 7.56e-01 93.5% 96.9%
2491358 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.84 75.0 4.48e-01 93.5% 16.0%
3164979 3856.1.2.1 beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › tailspike protein Orf211 N-terminal domain › Phage_tail_beta 0.77 69.0 6.50e-01 94.8% 91.1%
2485645 3856.1.2.1 beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › tailspike protein Orf211 N-terminal domain › Phage_tail_beta 0.76 66.0 6.33e-01 92.2% 86.4%
2491347 3856.1.2.1 beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › tailspike protein Orf211 N-terminal domain › Phage_tail_beta 0.74 67.0 6.37e-01 97.4% 88.6%
4044111 3856.1.2.0 beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › tailspike protein Orf211 N-terminal domain 0.71 58.0 6.09e-01 87.0% 100.0%
3493678 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.53 38.0 2.91e-01 77.9% 46.3%
3915894 389.1.2.1 few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi 0.52 35.0 3.75e-01 76.6% 81.5%
3924545 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.51 43.0 3.73e-01 93.5% 65.0%
3995388 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.51 34.0 2.95e-01 71.4% 44.2%
D3 medium residues 180-324
PDB
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pygA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.72 68.0 4.89e-01 100.0% 43.6%
2vbkA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.71 66.0 4.44e-01 100.0% 29.9%
7b7aA01 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.70 66.0 4.75e-01 100.0% 42.2%
3zppA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.70 66.0 4.61e-01 100.0% 52.3%
4mxnB00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.68 65.0 5.48e-01 100.0% 72.6%
5olpA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.68 64.0 4.44e-01 100.0% 45.4%
3gq8A01 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.68 64.0 4.36e-01 100.0% 36.9%
5gkqB01 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.60 54.0 3.99e-01 100.0% 53.1%
7chuA01 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.58 54.0 3.99e-01 100.0% 46.7%
1dbgA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.58 52.0 3.67e-01 100.0% 69.4%
1pxzA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.57 53.0 3.95e-01 100.0% 43.6%
5yvrA01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 37.0 3.37e-01 71.0% 76.6%
3zdrA01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 37.0 3.36e-01 71.0% 79.3%
2pgwA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.50 34.0 3.04e-01 97.9% 45.7%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2546335 207.2.1.32 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › CatAgl_D2 0.73 69.0 4.88e-01 100.0% 39.6%
3814525 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.72 69.0 4.88e-01 100.0% 41.0%
4355788 207.2.1.76 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD, Pect-lyase_RHGA_epim, Beta_helix 0.72 68.0 4.39e-01 99.3% 30.2%
4855553 207.2.1.94 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD, Pect-lyase_RHGA_epim 0.72 68.0 5.07e-01 100.0% 48.8%
4527582 207.2.1.76 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD, Pect-lyase_RHGA_epim, Beta_helix 0.72 68.0 4.86e-01 100.0% 42.3%
4446517 207.2.1.21 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3,Beta_helix 0.72 68.0 4.86e-01 100.0% 42.3%
3191422 207.2.1.20 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 0.70 67.0 4.06e-01 100.0% 23.2%
3987209 207.2.1.21 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3,Beta_helix 0.70 66.0 4.48e-01 100.0% 46.5%
3804144 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.70 66.0 4.55e-01 100.0% 37.2%
4449643 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.69 66.0 4.50e-01 100.0% 44.0%
4104747 207.2.1.20 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 0.69 65.0 4.56e-01 100.0% 46.3%
1121177 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.68 65.0 5.48e-01 100.0% 72.6%
3191775 207.2.1.20 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 0.68 65.0 3.96e-01 100.0% 23.7%
5018356 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.68 64.0 5.05e-01 100.0% 59.0%
2139004 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.68 64.0 4.44e-01 100.0% 45.5%
5003179 207.2.1.121 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Disaggr_assoc 0.67 64.0 4.49e-01 100.0% 37.8%
3326988 207.2.1.2 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28,Pectate_lyase_3 0.67 64.0 4.38e-01 100.0% 38.7%
2495545 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.66 60.0 4.14e-01 100.0% 31.0%
2325227 207.2.1.3 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_4 0.62 55.0 4.14e-01 100.0% 63.2%
3354845 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.61 56.0 4.08e-01 100.0% 45.8%
2163978 207.10.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Arctic yeast antifreeze protein › Arctic yeast antifreeze protein › Ice_binding 0.60 44.0 3.71e-01 100.0% 46.2%
2010241 207.2.1.24 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Chondroitinas_B 0.60 54.0 3.87e-01 100.0% 70.0%
3805269 207.2.1.4 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectinesterase 0.59 55.0 4.20e-01 100.0% 45.1%
3429808 207.1.1.95 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.56 45.0 4.34e-01 100.0% 73.5%
3455639 207.1.1.95 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.53 48.0 4.07e-01 100.0% 65.8%
3427943 208.2.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain 0.51 42.0 3.67e-01 100.0% 57.0%
5055004 2007.1.7.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Rossmann-like domain in dehydroquinate synthase-like enzymes › Fe-ADH 0.51 35.0 3.36e-01 71.0% 81.1%