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OR354820.1__WNM50425.1__Alsa1_CDS0075__00075

Bact-Vir

OR354820.1__WNM50425.1__Alsa1_CDS0075__00075

Identity

Accession:
OR354820 ↗
Kingdom:
phage

Quality

75.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Staphylococcus_phage_Alsa_1

TaxID: 3076561

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-79
PDB
Domain cluster: rep: KP054477.1__AIZ94734.1__LfeInf_108__00108__D3-74
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1w5sA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 59.0 5.34e-01 100.0% 91.3%
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.65 43.0 4.91e-01 71.2% 98.0%
2qbyB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 58.0 5.39e-01 100.0% 97.8%
1on2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 54.0 5.48e-01 90.4% 95.8%
3d5lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 39.0 4.82e-01 86.3% 100.0%
3mq1A01 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 29.0 2.72e-01 76.7% 33.7%
5hvqC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 52.0 4.76e-01 90.4% 82.7%
1u5tB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 48.0 4.97e-01 82.2% 94.2%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 55.0 4.93e-01 100.0% 87.6%
4ragA02 1.10.10.430 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Phosphatase 2C, C-terminal domain suprefamily 0.61 42.0 4.42e-01 80.8% 77.9%
3bz6A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 49.0 4.88e-01 89.0% 93.6%
2wocA00 1.10.4080.10 Mainly Alpha › Orthogonal Bundle › ADP-ribosylglycohydrolase fold › ADP-ribosylation/Crystallin J1 0.61 48.0 3.25e-01 87.7% 78.4%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 51.0 4.04e-01 95.9% 82.8%
3layF00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.58 29.0 2.91e-01 76.7% 44.9%
2do7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 47.0 4.59e-01 89.0% 90.0%
4rgxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 48.0 3.96e-01 98.6% 60.4%
3ilkA02 1.10.8.590 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.55 37.0 3.85e-01 89.0% 76.5%
3lkdB01 1.20.1260.30 Mainly Alpha › Up-down Bundle › Ferritin › N6 adenine-specific DNA methyltransferase, N-terminal domain 0.54 43.0 3.28e-01 90.4% 77.8%
7kypB01 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.54 46.0 3.16e-01 98.6% 74.0%
1o2dA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.53 40.0 3.17e-01 86.3% 58.7%
3t6aA00 1.10.840.10 Mainly Alpha › Orthogonal Bundle › Son of Sevenless (SoS) protein; Chain S, domain 2 › Ras guanine-nucleotide exchange factors catalytic domain 0.52 45.0 2.99e-01 98.6% 74.0%
3phuA01 3.90.70.80 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.52 36.0 2.87e-01 74.0% 64.8%
1dk5A02 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.51 37.0 3.74e-01 94.5% 77.8%
1b04A03 1.10.287.610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.51 35.0 3.72e-01 79.5% 83.9%
3lnnB03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.51 28.0 2.89e-01 76.7% 56.7%
3vs8H00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.51 44.0 2.82e-01 100.0% 49.7%
7r97A01 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.50 40.0 3.32e-01 93.2% 90.5%
6hxpA01 1.10.230.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 0.50 40.0 3.67e-01 89.0% 100.0%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3738676 101.1.1.207 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF6581 0.76 67.0 5.77e-01 95.9% 87.3%
3879117 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 48.0 5.47e-01 75.3% 89.1%
4953748 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 45.0 4.55e-01 75.3% 60.0%
5079733 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 52.0 5.17e-01 98.6% 72.0%
5083383 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 52.0 5.58e-01 86.3% 93.3%
3636036 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 48.0 5.23e-01 75.3% 86.7%
4979742 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 53.0 5.23e-01 100.0% 77.5%
3620979 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 46.0 5.00e-01 75.3% 94.5%
4927588 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 48.0 4.79e-01 78.1% 77.3%
4953119 101.1.2.805 ↗ alpha arrays › HTH › HTH › winged helix domain › PF26350 0.66 59.0 4.41e-01 100.0% 57.8%
5008229 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 57.0 5.70e-01 95.9% 100.0%
4060755 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 59.0 4.71e-01 100.0% 68.6%
3712603 1091.1.1.1 ↗ alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › Ribosomal_60s 0.64 46.0 4.73e-01 76.7% 85.7%
3580160 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.64 48.0 4.71e-01 82.2% 97.5%
4929815 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 46.0 4.80e-01 78.1% 90.8%
3261605 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.63 45.0 4.44e-01 76.7% 83.7%
5046292 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 49.0 4.83e-01 86.3% 87.5%
3422646 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 43.0 4.69e-01 84.9% 88.3%
5013300 101.1.2.652 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.63 56.0 4.47e-01 100.0% 67.6%
3589159 101.1.2.488 ↗ alpha arrays › HTH › HTH › winged helix domain › DDE_Tnp_IS66 0.62 46.0 4.66e-01 80.8% 78.7%
3330562 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.62 44.0 4.36e-01 80.8% 72.0%
169108 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.62 55.0 4.93e-01 100.0% 87.6%
3464617 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 43.0 4.66e-01 80.8% 90.0%
3235950 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 51.0 4.78e-01 91.8% 85.6%
3501700 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 53.0 5.15e-01 97.3% 95.0%
5030252 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.61 54.0 4.87e-01 98.6% 85.0%
4995581 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.59 52.0 4.74e-01 100.0% 93.0%
3255248 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.59 45.0 4.60e-01 80.8% 84.3%
5041315 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.59 52.0 4.68e-01 98.6% 91.0%
5022238 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 50.0 4.99e-01 95.9% 92.0%
4955611 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.59 49.0 4.43e-01 95.9% 85.6%
4961853 101.1.2.54 ↗ alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.59 46.0 4.64e-01 86.3% 90.7%
4682562 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.58 48.0 3.71e-01 95.9% 47.6%
4874203 1075.4.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.58 40.0 2.62e-01 71.2% 35.6%
4569734 195.1.1.1 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.58 44.0 3.66e-01 82.2% 81.5%
3587045 5065.1.1.2 ↗ alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.57 44.0 2.94e-01 83.6% 71.0%
3258043 3919.1.1.2 ↗ alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN 0.56 45.0 4.00e-01 89.0% 83.6%
4295379 195.1.1.1 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.56 45.0 3.66e-01 90.4% 80.7%
3288976 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.56 41.0 3.48e-01 82.2% 89.6%
4419826 314.1.1.9 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His 0.55 47.0 3.12e-01 98.6% 33.1%
4573533 195.1.1.1 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.55 43.0 3.60e-01 89.0% 80.0%
3739861 101.1.2.198 ↗ alpha arrays › HTH › HTH › winged helix domain › ORC1_wHTH 0.54 46.0 4.05e-01 100.0% 88.7%
3929910 101.1.2.507 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_TANC1 0.53 47.0 3.71e-01 100.0% 78.1%
3613366 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.52 42.0 3.78e-01 90.4% 82.9%
4181400 184.1.1.1 ↗ alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N 0.51 37.0 3.87e-01 89.0% 86.2%