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OR354821.1__WNM50823.1__Alsa2_CDS0209__00209

Bact-Vir

OR354821.1__WNM50823.1__Alsa2_CDS0209__00209

Identity

Accession:
OR354821 ↗
Kingdom:
phage

Quality

93.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Staphylococcus_phage_Alsa_2

TaxID: 3076562

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-72
PDB
Domain cluster: rep: MH729379.1__AXY81183.1__AVP_67__00067__D28-96
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1f9qD00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.72 35.0 3.66e-01 85.5% 48.5%
2bhvB01 2.40.128.260 Mainly Beta › Beta Barrel › Lipocalin › Type IV secretion system, VirB10/TraB/TrbI 0.65 51.0 3.95e-01 87.0% 98.8%
1jr7A00 3.60.130.10 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like 0.63 34.0 2.22e-01 97.1% 11.4%
1lwjA02 3.90.400.10 Alpha Beta › Alpha-Beta Complex › Oligo-1,6-glucosidase; domain 2 › Oligo-1,6-glucosidase; Domain 2 0.62 34.0 3.51e-01 79.7% 55.4%
3deeA02 3.90.930.50 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.60 36.0 3.03e-01 87.0% 35.1%
4aqlA01 2.30.40.10 Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 0.60 37.0 3.07e-01 89.9% 32.8%
5eqxA02 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.60 43.0 3.83e-01 76.8% 66.3%
4ifdG01 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.59 48.0 5.04e-01 88.4% 100.0%
1zbdB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.58 38.0 3.14e-01 81.2% 38.2%
1btkA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 37.0 2.85e-01 91.3% 28.7%
2ystA01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.57 41.0 3.56e-01 75.4% 61.0%
2c1lA02 2.40.330.30 Mainly Beta › Beta Barrel › At1g16640 B3 domain › 0.57 43.0 3.34e-01 84.1% 70.0%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.57 30.0 3.02e-01 91.3% 49.3%
3u21A00 1.10.10.2430 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NFRKB winged helix-like domain 0.55 39.0 3.45e-01 75.4% 94.5%
1n7oA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.54 37.0 3.50e-01 95.7% 58.8%
5oyhD00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.53 44.0 3.38e-01 100.0% 76.2%
2nn6G01 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.51 42.0 4.25e-01 95.7% 93.0%
1oe8A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 41.0 3.90e-01 87.0% 87.5%
4oo1I01 2.40.50.880 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 39.0 3.82e-01 85.5% 100.0%
1wtjA02 3.30.1370.60 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain 0.51 44.0 3.27e-01 100.0% 76.4%
1e54A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.51 39.0 2.58e-01 87.0% 67.4%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3812427 376.1.3.42 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › C1-like_CT 0.72 44.0 5.24e-01 84.1% 95.6%
3833660 377.1.1.47 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › C1-like_CT 0.69 44.0 4.55e-01 87.0% 69.2%
3271441 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.68 44.0 4.81e-01 89.9% 83.6%
4951189 802.1.1.0 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.65 33.0 3.79e-01 84.1% 66.0%
4159466 4020.1.1.0 ↗ a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes 0.64 50.0 4.02e-01 84.1% 54.9%
1866329 325.1.8.3 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › Rrp40_N 0.63 51.0 5.30e-01 94.2% 96.8%
185160 3551.1.1.1 ↗ alpha arrays › Pfam family PF09836 C-terminal domain › Pfam family PF09836 C-terminal domain › Pfam family PF09836 C-terminal domain › NGO1945_C 0.60 36.0 3.05e-01 87.0% 36.0%
3323282 325.1.8.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › ECR1_N 0.60 46.0 4.90e-01 81.2% 100.0%
3471930 325.1.8.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein 0.60 44.0 4.63e-01 85.5% 88.3%
3179525 325.1.8.3 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › Rrp40_N 0.58 43.0 4.36e-01 81.2% 100.0%
3994706 325.1.8.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein 0.57 47.0 4.85e-01 94.2% 98.5%
3725141 325.1.8.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein 0.57 45.0 4.80e-01 88.4% 100.0%
4903310 1043.1.1.1 ↗ beta complex topology › Beta domain of coronavirus spike glycoprotein › Beta domain of coronavirus spike glycoprotein › Beta domain of coronavirus spike glycoprotein › CoV_S1_C 0.56 35.0 2.91e-01 76.8% 35.3%
3741404 325.1.8.3 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › Rrp40_N 0.56 42.0 4.41e-01 84.1% 100.0%
3604881 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.56 36.0 3.82e-01 89.9% 76.3%
3479881 325.1.8.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein 0.56 46.0 3.93e-01 91.3% 71.7%
4023618 377.1.1.28 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Pcf11_C 0.55 40.0 4.30e-01 84.1% 90.0%
4838956 4246.1.1.4 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_2, RNA_pol_Rpb1_1 0.55 32.0 2.32e-01 78.3% 19.8%
3745376 376.1.3.4 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_2 0.55 36.0 3.56e-01 81.2% 62.7%
4915323 1043.1.1.3 ↗ beta complex topology › Beta domain of coronavirus spike glycoprotein › Beta domain of coronavirus spike glycoprotein › Beta domain of coronavirus spike glycoprotein › CoV_S2 0.55 33.0 2.76e-01 78.3% 31.3%
5068179 1143.1.1.1 ↗ beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.54 33.0 3.06e-01 85.5% 44.4%
3705580 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.54 36.0 2.24e-01 75.4% 11.3%
3716804 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.54 35.0 3.36e-01 87.0% 55.3%
4940924 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 34.0 3.29e-01 89.9% 52.9%
4506352 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 31.0 2.81e-01 85.5% 43.2%
3516458 325.1.8.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein 0.53 40.0 4.21e-01 84.1% 95.0%
5036295 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.53 39.0 4.25e-01 82.6% 98.2%
3725885 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.52 43.0 3.38e-01 95.7% 82.5%
4027220 331.23.1.0 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.52 32.0 3.05e-01 91.3% 52.5%
4955571 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.52 37.0 3.21e-01 76.8% 55.7%
5040325 220.1.1.290 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_5 0.51 40.0 3.52e-01 85.5% 60.2%
4007940 2002.1.1.4 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Alpha-amylase 0.51 41.0 2.59e-01 100.0% 59.2%
3640935 3543.1.1.4 ↗ alpha complex topology › Acid-activated urea channel › Acid-activated urea channel › Acid-activated urea channel › DUF716 0.50 37.0 2.63e-01 81.2% 93.2%