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OR354822.1__WNM51076.1__Alsa3_CDS0207__00207

Bact-Vir

OR354822.1__WNM51076.1__Alsa3_CDS0207__00207

Identity

Accession:
OR354822 ↗
Kingdom:
phage

Quality

70.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Staphylococcus_phage_Alsa_3

TaxID: 3076563

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-141_163-235
PDB
D2 high residues 554-669
PDB
Domain cluster: rep: KU935715.1__AND75289.1__ME3_128__00128__D432-531
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14284.12 best PcfJ 50.8 2.40e-13 90.5% 45.8%
D3 medium residues 238-322_347-360
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.66 34.0 3.54e-01 87.9% 53.3%
3u50C01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 37.0 3.44e-01 100.0% 44.9%
3ossC00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.60 34.0 4.04e-01 87.9% 84.6%
2y8tA03 2.10.70.70 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.58 27.0 3.45e-01 100.0% 76.4%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.58 40.0 3.35e-01 70.7% 64.4%
4uoiC00 3.30.160.890 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Hepatitis C virus envelope glycoprotein E1, chain C 0.58 25.0 3.33e-01 91.9% 74.5%
3v7dD01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.57 44.0 4.47e-01 100.0% 84.0%
4g2sA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.56 31.0 3.08e-01 100.0% 48.1%
4m7xA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 35.0 3.60e-01 88.9% 67.0%
2ettA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.50 36.0 3.32e-01 100.0% 57.8%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3953959 4.1.1.424 ↗ beta barrels › SH3 › SH3 › SH3 › PF29823 0.66 28.0 3.72e-01 96.0% 74.0%
1144827 4.1.1.79 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3601 0.66 34.0 3.56e-01 87.9% 53.9%
3948050 4152.1.1.1 ↗ a+b two layers › Shew3726-like › Shew3726-like › Shew3726-like › DUF1488 0.61 30.0 3.35e-01 98.0% 57.5%
4938727 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 35.0 3.63e-01 100.0% 60.0%
5014673 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.59 36.0 3.98e-01 87.9% 75.0%
3989890 4958.1.1.0 ↗ a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit 0.58 33.0 3.97e-01 89.9% 84.6%
3518991 284.1.3.4 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK 0.58 42.0 4.69e-01 96.0% 100.0%
3658020 2.1.1.123 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CDC24_OB3 0.57 35.0 3.15e-01 71.7% 44.4%
4962615 319.1.1.4 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.57 34.0 3.50e-01 100.0% 62.1%
3252808 1170.1.2.0 ↗ beta barrels › IL8-related › IL8-related › chemokine-related domain in glycoprotein L (gL) 0.55 29.0 3.41e-01 75.8% 70.0%
3324949 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 32.0 3.15e-01 75.8% 53.3%
5008587 2484.1.1.330 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF460 0.54 39.0 2.84e-01 88.9% 25.9%
5044010 2484.1.1.136 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutL 0.54 38.0 3.17e-01 75.8% 67.2%
4538358 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.53 31.0 2.98e-01 100.0% 49.6%
5031493 319.1.1.23 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF29697 0.53 31.0 3.49e-01 99.0% 74.4%
3783181 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.53 35.0 3.38e-01 100.0% 60.0%
3244934 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.53 40.0 2.90e-01 84.8% 38.0%
3287903 802.1.1.1 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 › BFN_dom 0.52 27.0 3.45e-01 71.7% 96.0%
3686561 2003.1.2.102 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3, Pyr_redox_2 0.52 46.0 3.04e-01 100.0% 75.7%
4244036 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 44.0 3.82e-01 94.9% 65.8%
3720000 330.16.1.0 ↗ a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain 0.51 35.0 4.00e-01 97.0% 100.0%
3864474 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.51 33.0 2.88e-01 100.0% 40.0%
3262159 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.51 34.0 3.13e-01 100.0% 51.5%
3589823 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.51 27.0 3.29e-01 88.9% 80.0%
158729 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.50 36.0 3.38e-01 100.0% 61.2%