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OR354823.1__WNM51343.1__Alsa4_CDS0213__00212

Bact-Vir

OR354823.1__WNM51343.1__Alsa4_CDS0213__00212

Identity

Accession:
OR354823 ↗
Kingdom:
phage

Quality

85.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Staphylococcus_phage_Alsa_4

TaxID: 3076564

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-163
PDB
Domain cluster: rep: OQ129426.1__WFG33958.1__F10086_36__00036__D10-175
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1pn2B01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.65 35.0 3.59e-01 97.4% 54.1%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 23.0 3.23e-01 75.6% 75.7%
3djwA00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 27.0 3.32e-01 84.6% 70.5%
6lofA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.56 41.0 4.07e-01 97.4% 71.6%
2cy5A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 38.0 4.16e-01 96.2% 86.0%
2gaiA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.54 29.0 3.22e-01 82.7% 64.2%
3l4rA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 39.0 3.96e-01 96.8% 78.1%
1kyfA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.53 33.0 3.87e-01 99.4% 86.7%
1h91A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 40.0 3.82e-01 98.7% 69.4%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.52 22.0 3.13e-01 91.7% 87.7%
6zj8D01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 29.0 3.39e-01 92.3% 77.2%
4jgpA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 28.0 3.50e-01 91.7% 85.9%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3962753 222.1.1.9 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydrat_N 0.66 34.0 4.30e-01 98.1% 82.1%
3283651 222.1.1.9 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydrat_N 0.63 33.0 3.69e-01 98.1% 62.4%
3957635 222.1.1.9 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydrat_N 0.62 33.0 4.04e-01 97.4% 79.0%
4940126 504.1.1.0 ↗ a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.58 27.0 3.00e-01 89.7% 53.3%
358775 271.1.1.1 ↗ beta barrels › GFP-like › GFP-like › GFP-like › GFP 0.57 40.0 3.91e-01 96.8% 66.9%
3742949 331.9.1.1 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Alpha_adaptin_C 0.54 34.0 3.89e-01 99.4% 83.1%
5054725 504.1.1.0 ↗ a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.54 25.0 2.82e-01 76.9% 53.3%
4644143 504.1.1.0 ↗ a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.54 25.0 2.73e-01 91.0% 50.0%
3703112 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 30.0 3.41e-01 85.9% 72.5%
4997576 223.1.1.27 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 0.53 30.0 3.54e-01 82.7% 79.1%
3285565 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 30.0 3.58e-01 82.7% 82.9%
3973879 223.1.1.24 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 0.52 32.0 3.21e-01 80.8% 59.4%
2325630 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 32.0 3.61e-01 81.4% 85.6%
4195296 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 28.0 3.36e-01 88.5% 78.2%
D2 high residues 175-287
PDB
Domain cluster: rep: OQ129426.1__WFG33958.1__F10086_36__00036__D184-294
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.79 30.0 4.13e-01 100.0% 66.1%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.74 45.0 5.09e-01 89.4% 79.1%
2oviA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.73 61.0 5.40e-01 99.1% 63.3%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.73 48.0 4.87e-01 86.7% 68.8%
5exvC00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.72 61.0 5.34e-01 100.0% 61.8%
2n54B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.72 28.0 3.74e-01 76.1% 65.2%
4dm5A00 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.71 30.0 3.40e-01 99.1% 50.6%
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.71 58.0 5.50e-01 94.7% 74.4%
2hqvA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.69 57.0 5.00e-01 100.0% 58.7%
4ifsA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.68 47.0 4.46e-01 86.7% 60.6%
2gcjA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.68 47.0 4.42e-01 86.7% 59.7%
3voqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 45.0 4.47e-01 92.0% 75.9%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 48.0 4.68e-01 99.1% 80.6%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 45.0 4.24e-01 84.1% 77.1%
2cy5A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 46.0 4.42e-01 86.7% 84.5%
3c4aA02 3.30.9.20 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › 0.55 33.0 3.01e-01 100.0% 44.6%
4kcaA03 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.54 44.0 4.70e-01 100.0% 100.0%
1e50B00 2.40.250.10 Mainly Beta › Beta Barrel › Polyomavirus Enhancer Binding Protein 2; Chain: A; › Core binding factor, beta subunit 0.52 38.0 3.67e-01 92.0% 66.9%
2bg1A02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 41.0 2.96e-01 84.1% 80.8%
4bf3A00 2.30.31.50 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Borrelia outer surface protein E/F 0.51 39.0 3.69e-01 80.5% 88.7%
2bs6A01 2.40.128.190 Mainly Beta › Beta Barrel › Lipocalin › 0.51 31.0 3.58e-01 100.0% 83.3%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.51 40.0 3.75e-01 83.2% 69.9%
3hlzB01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.51 36.0 3.35e-01 73.5% 65.0%
3wjcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 38.0 3.44e-01 79.6% 88.9%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4674129 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.78 50.0 5.19e-01 86.7% 69.5%
3234621 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.73 51.0 4.75e-01 86.7% 59.3%
3967527 4216.1.1.1 ↗ a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › HemS 0.73 61.0 5.31e-01 100.0% 60.4%
4380236 4216.1.1.2 ↗ a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › ChuX_HutX 0.72 61.0 5.19e-01 100.0% 57.6%
2663669 4216.1.1.2 ↗ a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › ChuX_HutX 0.72 60.0 5.29e-01 99.1% 62.5%
1758949 4216.1.1.1 ↗ a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › HemS 0.72 59.0 5.56e-01 99.1% 73.5%
3514856 1181.1.1.0 ↗ 0.71 30.0 3.64e-01 77.0% 60.0%
3907293 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.71 49.0 5.06e-01 86.7% 76.2%
7765 4216.1.1.2 ↗ a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › ChuX_HutX 0.70 58.0 5.65e-01 100.0% 80.2%
4949986 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.70 51.0 5.18e-01 84.1% 77.3%
3914585 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.70 48.0 5.01e-01 86.7% 76.2%
3496857 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 51.0 5.29e-01 77.0% 82.9%
5007104 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.68 50.0 5.21e-01 86.7% 81.9%
3705153 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 56.0 5.22e-01 86.7% 73.3%
3231836 220.1.1.176 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7778 0.67 50.0 4.57e-01 84.1% 59.3%
5039819 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.67 55.0 5.25e-01 100.0% 76.2%
3925426 220.1.1.176 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7778 0.66 50.0 4.64e-01 84.1% 63.6%
3544563 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 46.0 4.74e-01 86.7% 76.2%
3607882 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 46.0 4.72e-01 86.7% 73.6%
3564088 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 49.0 4.96e-01 86.7% 79.1%
4964696 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.66 50.0 5.02e-01 81.4% 78.3%
3796013 220.1.1.176 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7778 0.66 49.0 4.71e-01 84.1% 68.5%
5055513 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.64 52.0 5.09e-01 100.0% 80.8%
5023750 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.63 51.0 4.92e-01 100.0% 76.8%
3877687 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 51.0 4.83e-01 86.7% 73.8%
3592181 220.1.1.74 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.62 44.0 4.18e-01 84.1% 62.2%
3598862 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 46.0 4.53e-01 86.7% 74.2%
3771406 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 49.0 4.73e-01 86.7% 81.6%
4357706 60.1.2.1 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.59 38.0 2.94e-01 99.1% 31.3%
3810562 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 32.0 3.69e-01 100.0% 76.0%
4443775 60.1.2.1 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.58 37.0 2.92e-01 99.1% 32.7%
1283866 220.1.1.51 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ISP3_C 0.58 48.0 4.68e-01 99.1% 80.6%
3176053 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 45.0 4.33e-01 86.7% 72.3%
4606042 60.1.2.1 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.58 36.0 2.76e-01 99.1% 28.4%
4190768 60.1.2.1 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.57 36.0 2.80e-01 99.1% 29.8%
4459347 60.1.2.1 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.57 36.0 2.77e-01 99.1% 29.4%
4975015 60.1.2.1 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.56 36.0 2.76e-01 99.1% 29.4%
4987158 60.1.2.1 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.56 35.0 2.73e-01 99.1% 29.0%
4090669 60.1.2.1 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.56 35.0 2.74e-01 99.1% 29.4%
4404169 60.1.2.1 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.56 36.0 2.71e-01 99.1% 28.2%
4510810 60.1.2.1 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.56 35.0 2.81e-01 99.1% 32.0%
4443286 60.1.2.1 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.55 35.0 2.70e-01 99.1% 28.1%
4242756 60.1.2.1 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.55 35.0 2.85e-01 99.1% 34.3%
3615838 517.1.1.1 ↗ beta barrels › CBF-like › Core binding factor beta, CBF › Core binding factor beta, CBF › CBF_beta 0.55 36.0 3.48e-01 91.2% 56.3%
3210606 220.1.1.58 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.54 42.0 4.10e-01 85.0% 75.2%
3924612 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.54 46.0 4.35e-01 92.0% 80.7%
3295586 881.1.1.1 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.53 38.0 3.34e-01 73.5% 53.3%
3399913 517.1.1.1 ↗ beta barrels › CBF-like › Core binding factor beta, CBF › Core binding factor beta, CBF › CBF_beta 0.52 38.0 3.38e-01 91.2% 53.1%
3704834 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.51 29.0 3.20e-01 76.1% 68.4%
3879684 223.2.1.46 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › FNIP_N, FNIP_M 0.51 36.0 3.11e-01 78.8% 49.7%
1286181 881.1.1.7 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF3805 0.51 36.0 3.39e-01 73.5% 66.9%