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OR354831.1__WNM52577.1__CoNPh8_CDS0023__00022

Bact-Vir

OR354831.1__WNM52577.1__CoNPh8_CDS0023__00022

Identity

Accession:
OR354831 ↗
Kingdom:
phage

Quality

88.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-40
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pm6D01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.74 52.0 3.09e-01 76.3% 93.9%
1fjmB00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.71 48.0 2.89e-01 73.7% 83.4%
3riqA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.69 56.0 3.13e-01 100.0% 6.7%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.68 50.0 3.59e-01 81.6% 65.3%
2azpA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.68 57.0 3.86e-01 100.0% 25.5%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.67 48.0 3.55e-01 78.9% 51.4%
7ylsB01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.66 50.0 3.75e-01 100.0% 32.4%
7q04F01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.65 52.0 3.87e-01 100.0% 33.0%
2zylA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.65 50.0 3.55e-01 100.0% 25.9%
3hshE00 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.64 48.0 4.52e-01 100.0% 65.5%
2gnxA02 3.30.450.240 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.64 51.0 3.88e-01 100.0% 45.0%
2ww8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 54.0 3.97e-01 100.0% 75.5%
3vcaA02 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.64 50.0 3.68e-01 100.0% 30.3%
3gkeA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.64 49.0 3.47e-01 100.0% 26.2%
7fjlA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.63 50.0 3.50e-01 100.0% 26.3%
2j8gA02 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.63 48.0 3.96e-01 94.7% 72.0%
3bn8A00 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.62 53.0 3.82e-01 100.0% 40.5%
3h37A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.62 49.0 3.44e-01 100.0% 86.2%
1k32A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 52.0 3.02e-01 100.0% 92.6%
4bt2A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.61 47.0 3.55e-01 100.0% 31.6%
4tvcA01 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.61 49.0 3.27e-01 100.0% 38.3%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.60 40.0 3.49e-01 71.1% 81.2%
4okcA01 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.60 47.0 3.99e-01 100.0% 50.7%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 46.0 2.65e-01 89.5% 8.5%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 40.0 3.69e-01 73.7% 76.4%
4tkcA00 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.58 44.0 3.28e-01 100.0% 29.7%
1cdwA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.58 43.0 3.44e-01 86.8% 57.0%
5dezA03 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.58 46.0 3.81e-01 94.7% 78.4%
1itxA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.58 43.0 3.65e-01 89.5% 86.3%
6z46V01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.57 41.0 2.92e-01 100.0% 25.3%
1r9cA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.57 41.0 2.95e-01 81.6% 40.8%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.56 44.0 3.19e-01 100.0% 26.0%
1goiA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.56 42.0 3.35e-01 89.5% 88.9%
3e0rA02 3.10.180.40 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › C3-degrading proteinase like domains 0.55 42.0 3.10e-01 89.5% 46.3%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 48.0 4.03e-01 100.0% 66.7%
1aisA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.55 41.0 3.31e-01 89.5% 56.3%
5z0uA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 40.0 3.38e-01 97.4% 64.4%
2lojA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.55 41.0 4.10e-01 100.0% 84.6%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 37.0 3.33e-01 71.1% 72.4%
3e82E02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 45.0 2.82e-01 94.7% 28.0%
1y13A00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.54 44.0 3.01e-01 100.0% 63.8%
3eafA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 42.0 2.86e-01 100.0% 36.2%
2v05A02 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.53 39.0 2.73e-01 94.7% 33.1%
7szeB01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.53 39.0 3.12e-01 100.0% 37.4%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 41.0 2.92e-01 100.0% 50.7%
4dapA01 2.40.50.580 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 43.0 3.48e-01 100.0% 97.5%
1i1nA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 36.0 2.49e-01 100.0% 21.0%
5c68A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 38.0 2.85e-01 78.9% 48.6%
2pt7C01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 37.0 3.01e-01 100.0% 94.3%
2x8nA01 3.30.2020.40 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 0.51 40.0 3.15e-01 100.0% 71.1%
4ntcA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 40.0 2.96e-01 97.4% 38.7%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3985798 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.78 66.0 5.02e-01 100.0% 48.4%
4494129 880.1.1.1 a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.73 51.0 2.84e-01 73.7% 11.2%
3852171 391.1.1.5 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › TILa 0.73 54.0 5.40e-01 100.0% 80.0%
3935301 391.1.2.11 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC2L_2nd 0.72 55.0 4.98e-01 100.0% 60.0%
3968312 66.1.1.1 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.72 60.0 4.38e-01 100.0% 34.3%
4856563 66.1.1.0 beta sandwiches › ISP domain › ISP domain › ISP domain 0.71 57.0 5.69e-01 100.0% 87.5%
3694130 4317.1.1.0 a+b duplicates or obligate multimers › YdfO-like › YdfO-like › YdfO-like 0.70 49.0 4.39e-01 76.3% 100.0%
4499078 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.69 51.0 4.36e-01 100.0% 47.1%
3938632 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.69 54.0 4.13e-01 100.0% 36.0%
3397609 391.1.2.3 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › SVWC 0.68 52.0 4.05e-01 100.0% 35.8%
4943340 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.68 54.0 4.39e-01 100.0% 50.6%
3992587 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.68 48.0 2.63e-01 76.3% 43.2%
3282813 268.1.1.0 a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related 0.66 56.0 4.48e-01 100.0% 48.8%
4641081 391.1.2.18 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › TILa 0.66 47.0 4.40e-01 100.0% 58.2%
3498702 3761.1.1.2 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.66 52.0 5.07e-01 100.0% 86.7%
3476114 2484.1.1.1 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.66 50.0 2.96e-01 100.0% 14.1%
2719643 66.1.1.0 beta sandwiches › ISP domain › ISP domain › ISP domain 0.65 51.0 4.14e-01 100.0% 43.9%
3231089 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.65 45.0 4.43e-01 100.0% 70.0%
4174422 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.63 48.0 3.49e-01 94.7% 56.2%
3755669 391.1.1.5 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › TILa 0.63 47.0 4.70e-01 92.1% 82.5%
5012352 4312.1.1.15 a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.62 42.0 3.31e-01 71.1% 70.6%
3367529 5.1.3.234 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF7899 0.62 52.0 3.19e-01 97.4% 35.9%
3585186 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.62 43.0 4.40e-01 100.0% 80.0%
3532309 391.1.1.5 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › TILa 0.62 46.0 4.12e-01 92.1% 55.0%
1826876 702.1.1.3 beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_1,Choline_bind_2 0.62 47.0 3.02e-01 94.7% 25.3%
4079885 274.1.1.25 a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF 0.61 48.0 3.66e-01 89.5% 51.6%
4191161 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.61 46.0 4.62e-01 89.5% 92.3%
3605675 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 51.0 2.90e-01 100.0% 86.7%
4027091 375.3.1.2 few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger › zf-CSL 0.61 42.0 3.86e-01 76.3% 65.5%
3589071 9.1.1.32 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF4828 0.61 50.0 4.09e-01 97.4% 69.3%
3987255 702.1.1.3 beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_1,Choline_bind_2 0.60 45.0 2.86e-01 94.7% 23.7%
3928729 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.60 49.0 3.15e-01 100.0% 30.6%
2581368 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.59 42.0 4.25e-01 97.4% 82.1%
4048173 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.59 48.0 3.52e-01 100.0% 33.3%
29093 66.1.1.0 beta sandwiches › ISP domain › ISP domain › ISP domain 0.59 46.0 4.56e-01 100.0% 87.5%
4968925 375.1.1.356 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF29210 0.59 46.0 4.59e-01 97.4% 87.5%
4960622 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 42.0 3.53e-01 100.0% 41.1%
4990900 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 45.0 3.57e-01 100.0% 39.0%
3714061 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 48.0 4.49e-01 100.0% 90.0%
3988985 702.1.1.3 beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_1,Choline_bind_2 0.56 43.0 3.44e-01 97.4% 58.0%
4985176 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.56 40.0 3.04e-01 78.9% 42.7%
3185909 394.1.1.2 few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_19 0.56 38.0 3.66e-01 78.9% 58.0%
4325818 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.53 43.0 2.61e-01 100.0% 20.9%
2801566 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.52 39.0 2.41e-01 100.0% 43.0%
3471542 7585.1.1.0 a/b three-layered sandwiches › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins 0.51 42.0 3.03e-01 100.0% 43.0%
4946054 2002.1.1.442 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Mob_synth_C 0.51 39.0 2.44e-01 100.0% 22.4%
4436120 2002.1.1.121 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,Mob_synth_C 0.51 39.0 2.39e-01 89.5% 13.3%
5061404 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.50 42.0 2.55e-01 100.0% 30.5%
4030857 3355.1.1.16 alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › DcuC 0.50 39.0 2.28e-01 100.0% 24.5%