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OR354839.1__WNM54043.1__CoNPh16_CDS0028__00028

Bact-Vir

OR354839.1__WNM54043.1__CoNPh16_CDS0028__00028

Identity

Accession:
OR354839 ↗
Kingdom:
phage

Quality

81.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sextaecvirus› Staphylococcus_phage_S-CoN_Ph16

TaxID: 3076572

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-59
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07972.17 best Flavodoxin_NdrI 27.5 4.20e-06 96.1% 45.8%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3delB02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.68 58.0 4.84e-01 100.0% 61.3%
1gpwD00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.68 57.0 3.89e-01 100.0% 50.7%
1ex2A00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.68 52.0 3.61e-01 88.2% 54.6%
1j5pA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.67 57.0 4.33e-01 100.0% 72.3%
4i62A02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.66 56.0 4.71e-01 100.0% 62.4%
6jimB02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 55.0 4.22e-01 100.0% 60.2%
5t3oA02 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.65 54.0 4.07e-01 100.0% 71.2%
3al2A02 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.63 53.0 4.41e-01 100.0% 85.6%
2pbzA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.63 51.0 4.57e-01 100.0% 95.1%
7u35A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.62 51.0 4.37e-01 100.0% 84.8%
7p0jA01 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.62 52.0 4.46e-01 100.0% 57.8%
3mpkA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.62 52.0 4.38e-01 100.0% 61.1%
5aa2B02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.62 52.0 4.36e-01 100.0% 65.6%
2n3zA00 3.40.50.11230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.61 52.0 4.27e-01 100.0% 54.5%
3luyA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.56 47.0 4.26e-01 100.0% 70.3%
4zs9A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.54 39.0 2.94e-01 86.3% 91.5%
6aefA01 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.51 37.0 2.43e-01 80.4% 31.3%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3868109 7603.1.1.3 ↗ a/b three-layered sandwiches › Immunomodulating metalloprotease IMPa N-terminal domain › Immunomodulating metalloprotease IMPa N-terminal domain › Immunomodulating metalloprotease IMPa N-terminal domain › PF27016 0.69 54.0 3.63e-01 100.0% 22.0%
3985306 2007.1.3.43 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › PF30453 0.67 57.0 4.49e-01 100.0% 51.3%
2723974 7604.1.1.1 ↗ a/b three-layered sandwiches › a/b domain in Acetophenone carboxylase (Apc) alpha subunit › a/b domain in Acetophenone carboxylase (Apc) alpha subunit › a/b domain in Acetophenone carboxylase (Apc) alpha subunit › Hydant_A_N 0.63 51.0 3.95e-01 100.0% 68.6%
4599785 2006.1.3.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.61 48.0 3.75e-01 100.0% 72.9%
9125 2003.1.1.43 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_3 0.58 46.0 3.84e-01 100.0% 55.5%
4400016 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 45.0 4.07e-01 98.0% 61.3%
4930450 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.57 46.0 3.70e-01 100.0% 49.2%