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OR354839.1__WNM54105.1__CoNPh16_CDS0090__00090

Bact-Vir

OR354839.1__WNM54105.1__CoNPh16_CDS0090__00090

Identity

Accession:
OR354839 ↗
Kingdom:
phage

Quality

86.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sextaecvirus› Staphylococcus_phage_S-CoN_Ph16

TaxID: 3076572

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-161
PDB
Domain cluster: rep: S2_003_000_R3_scaffold_4_prodigal-single.1__X__X__00244__D10-187
Pfam (3)
AccessionNameScoreE-valueQ covHMM cov
PF06414.19 best Zeta_toxin 28.9 1.00e-06 95.0% 75.9%
PF08433.17 KTI12 33.6 4.20e-08 89.9% 49.8%
PF13671.13 AAA_33 76.0 5.50e-21 88.0% 95.1%
D2 medium residues 168-303
PDB
Domain cluster: rep: MZ398246.1__QYC97160.1__X__00021__D19-121
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00149.34 best Metallophos 55.9 1.10e-14 93.4% 50.5%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fjmB00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.80 53.0 4.03e-01 97.8% 31.8%
2dfjA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.78 52.0 4.05e-01 93.4% 34.1%
2bpoA04 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.59 38.0 3.57e-01 84.6% 53.1%
2rc5A02 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.59 37.0 3.55e-01 84.6% 52.8%
1fdrA02 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.57 35.0 3.38e-01 83.1% 52.6%
1dinA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 36.0 3.03e-01 86.0% 40.8%
6jtdA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.52 45.0 3.67e-01 96.3% 72.2%
4tvsA00 3.40.50.12190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 43.0 3.72e-01 98.5% 56.2%
7jt8I02 3.90.190.20 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain 0.51 34.0 3.39e-01 95.6% 63.2%
2hy1A00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.51 42.0 3.51e-01 86.8% 52.4%
3n70A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 38.0 3.80e-01 97.1% 75.4%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5019947 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.86 65.0 5.34e-01 99.3% 46.7%
3611857 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.77 55.0 4.08e-01 100.0% 31.5%
5050222 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.77 54.0 4.06e-01 97.1% 32.3%
3943571 7514.1.1.1 ↗ a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 0.64 39.0 3.92e-01 84.6% 58.6%
3562065 7516.1.1.107 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_7C, CHGN 0.62 36.0 2.74e-01 89.0% 23.7%
4110062 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.61 34.0 2.64e-01 86.8% 24.1%
None — 0.58 46.0 3.32e-01 86.0% 81.2%
4393998 7570.1.1.1 ↗ a/b three-layered sandwiches › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › Mur_ligase_C 0.57 36.0 3.53e-01 97.1% 55.5%
3596837 246.2.1.0 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases 0.57 53.0 3.88e-01 100.0% 81.7%
4243229 7514.1.1.3 ↗ a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_6 0.55 37.0 3.59e-01 83.1% 58.9%
4257664 7570.1.1.1 ↗ a/b three-layered sandwiches › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › Mur_ligase_C 0.55 36.0 3.56e-01 97.8% 61.1%
5030031 7516.1.1.0 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases 0.55 33.0 2.74e-01 86.8% 30.4%
4192171 7570.1.1.1 ↗ a/b three-layered sandwiches › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › Mur_ligase_C 0.53 35.0 3.42e-01 97.8% 58.7%
3880654 2003.1.1.82 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Slo-like_RCK 0.51 43.0 3.15e-01 94.1% 59.0%