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OR354840.1__WNM54227.1__CoNPh17_CDS0031__00031

Bact-Vir

OR354840.1__WNM54227.1__CoNPh17_CDS0031__00031

Identity

Accession:
OR354840 ↗
Kingdom:
phage

Quality

91.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sextaecvirus› Staphylococcus_phage_S-CoN_Ph17

TaxID: 3076573

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-36
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3dn7A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.69 53.0 3.46e-01 90.0% 63.4%
3nkgA00 2.60.120.790 Mainly Beta › Sandwich › Jelly Rolls › 0.66 53.0 3.33e-01 90.0% 52.9%
3n2oC01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.65 47.0 2.90e-01 83.3% 69.7%
2xqxA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.62 47.0 3.19e-01 100.0% 35.4%
3tg9A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.61 44.0 2.53e-01 80.0% 51.9%
2xhkB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 43.0 3.05e-01 90.0% 72.4%
3icyA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 41.0 2.80e-01 80.0% 16.1%
1r0vA01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.58 42.0 3.43e-01 96.7% 44.2%
3d6wB02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.58 42.0 4.00e-01 90.0% 61.5%
3b70A01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.56 44.0 2.87e-01 100.0% 47.3%
1bd3A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 40.0 2.47e-01 83.3% 17.9%
1ri6A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 36.0 2.20e-01 96.7% 58.3%
4asmB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 41.0 2.41e-01 93.3% 31.9%
3tm4A01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.54 37.0 2.48e-01 100.0% 23.8%
6njeA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.53 36.0 2.24e-01 93.3% 38.0%
2dlbA00 3.10.20.330 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function YopT 0.53 38.0 3.23e-01 96.7% 71.4%
5ek8A01 2.60.40.3330 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 41.0 2.92e-01 100.0% 38.9%
2byvE05 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 38.0 3.09e-01 100.0% 45.6%
2hlyA00 3.10.550.10 Alpha Beta › Roll › Atu2299-like › Hypothetical protein Atu2299 0.52 39.0 2.55e-01 100.0% 87.8%
4k7cA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 36.0 2.11e-01 100.0% 87.1%
3c7aA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 39.0 2.52e-01 100.0% 27.3%
5i9eA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.51 37.0 2.71e-01 100.0% 33.6%
2wdoA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.51 38.0 2.69e-01 90.0% 51.2%
2fauA01 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 34.0 2.46e-01 93.3% 68.9%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3266082 109.6.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF,RasGEF_N 0.77 54.0 3.02e-01 76.7% 85.4%
3960804 327.5.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C 0.66 46.0 3.00e-01 70.0% 17.0%
3253806 10.12.1.53 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_3 0.65 50.0 3.07e-01 93.3% 71.0%
3935869 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.60 53.0 4.31e-01 100.0% 53.4%
5029523 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.58 34.0 3.00e-01 70.0% 33.3%
3337719 1.1.11.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain 0.58 39.0 3.51e-01 100.0% 55.1%
4959355 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 43.0 2.60e-01 83.3% 10.6%
5018509 2008.1.1.15 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N 0.57 43.0 2.64e-01 100.0% 12.9%
3839772 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 40.0 2.52e-01 80.0% 16.6%
3276546 314.1.1.9 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His 0.55 40.0 2.30e-01 73.3% 16.3%
4087557 7581.1.1.1 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N 0.55 42.0 2.50e-01 93.3% 67.5%
4383749 2005.1.1.7 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.55 43.0 2.50e-01 100.0% 17.7%
3581193 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.53 37.0 2.19e-01 100.0% 79.7%
144465 4019.1.1.1 ↗ alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.53 45.0 2.85e-01 100.0% 94.3%
3720434 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.52 40.0 2.58e-01 100.0% 23.2%
7412 219.1.1.46 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF2026 0.52 39.0 2.57e-01 100.0% 90.0%
3595427 67.1.1.0 ↗ beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain 0.51 42.0 3.20e-01 90.0% 32.2%
3702572 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.51 35.0 2.13e-01 93.3% 38.3%
4058492 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 36.0 2.66e-01 90.0% 20.9%
4778908 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 42.0 3.19e-01 73.3% 24.7%
5049247 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.50 43.0 2.48e-01 100.0% 8.8%
3635617 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.50 37.0 3.53e-01 96.7% 86.7%