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OR354840.1__WNM54417.1__CoNPh17_CDS0221__00221

Bact-Vir

OR354840.1__WNM54417.1__CoNPh17_CDS0221__00221

Identity

Accession:
OR354840 ↗
Kingdom:
phage

Quality

71.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sextaecvirus› Staphylococcus_phage_S-CoN_Ph17

TaxID: 3076573

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 95-178
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kdrA02 3.40.140.120 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › 0.75 66.0 5.70e-01 100.0% 63.0%
1ex4B02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.61 36.0 4.12e-01 70.2% 83.1%
1o75A03 2.60.40.1300 Mainly Beta › Sandwich › Immunoglobulin-like › Penicillin-binding protein Tp47, domain C 0.59 41.0 3.52e-01 71.4% 53.1%
1xreA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.57 46.0 4.19e-01 100.0% 65.2%
3r4rA01 2.60.40.2580 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 38.0 3.21e-01 70.2% 66.4%
2aq6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 38.0 3.20e-01 71.4% 90.2%
3r3pB00 3.40.960.10 Alpha Beta › 3-Layer(aba) Sandwich › Endonuclease; Chain A › VSR Endonuclease 0.52 33.0 3.15e-01 95.2% 54.1%
3ethA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.51 28.0 3.10e-01 72.6% 67.7%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4146531 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.74 51.0 5.42e-01 71.4% 86.7%
4034031 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.74 51.0 5.68e-01 71.4% 96.9%
3942998 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.74 51.0 5.49e-01 71.4% 90.0%
5082482 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.72 49.0 5.17e-01 70.2% 84.0%
4031151 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.71 49.0 5.17e-01 71.4% 89.3%
3778437 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.69 35.0 3.14e-01 71.4% 33.9%
3709607 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.62 34.0 2.63e-01 96.4% 25.1%
223882 11.1.4.13 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › P_gingi_FimA 0.57 38.0 3.22e-01 70.2% 66.9%
4191334 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.56 28.0 2.44e-01 97.6% 29.9%
4942805 4.1.1.301 ↗ beta barrels › SH3 › SH3 › SH3 › MJ1316 0.55 38.0 3.83e-01 72.6% 72.9%
4953135 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.53 27.0 2.31e-01 96.4% 26.2%
5037801 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 41.0 4.04e-01 83.3% 79.8%
3185137 228.1.1.1 ↗ a+b three layers › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Sod_Fe_C 0.53 44.0 3.92e-01 100.0% 64.2%
3813966 390.1.1.6 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_2 0.53 36.0 3.75e-01 95.2% 78.7%
3231860 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 38.0 3.46e-01 78.6% 70.0%
4954628 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 36.0 3.38e-01 72.6% 59.0%
1669667 223.3.1.1 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.51 29.0 3.38e-01 97.6% 83.6%
3250018 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.51 37.0 2.95e-01 77.4% 78.9%
5051087 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.50 27.0 2.48e-01 97.6% 37.3%