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OR354840.1__WNM54439.1__CoNPh17_CDS0244__00243

Bact-Vir

OR354840.1__WNM54439.1__CoNPh17_CDS0244__00243

Identity

Accession:
OR354840 ↗
Kingdom:
phage

Quality

92.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sextaecvirus› Staphylococcus_phage_S-CoN_Ph17

TaxID: 3076573

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-108
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3beeA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 35.0 3.79e-01 76.9% 69.2%
4k6jB00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.56 48.0 3.25e-01 100.0% 51.4%
3kezA03 1.25.40.900 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 33.0 3.29e-01 74.1% 57.3%
1xjkA00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.52 45.0 2.87e-01 100.0% 90.1%
1nbwA04 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 38.0 3.57e-01 76.9% 90.9%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3247942 109.16.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › TROVE domain-like › TROVE domain-like › DUF2828 0.86 66.0 4.75e-01 87.0% 31.5%
3640451 109.16.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › TROVE domain-like › TROVE domain-like › DUF2828 0.78 69.0 4.66e-01 93.5% 28.2%
4000134 109.4.1.162 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nup192 0.61 54.0 3.22e-01 99.1% 67.7%
3746278 109.4.1.162 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nup192 0.60 53.0 2.91e-01 99.1% 23.6%
3846614 109.4.1.162 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nup192 0.60 53.0 2.94e-01 99.1% 28.1%
3832974 109.4.1.1963 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30979 0.59 48.0 3.80e-01 88.0% 42.7%
4593096 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.58 47.0 3.10e-01 91.7% 37.7%
3573380 109.4.1.72 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps16_C 0.57 48.0 3.39e-01 91.7% 44.3%
3628487 109.4.1.1154 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS7_N 0.57 50.0 4.02e-01 100.0% 57.3%
3580692 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.56 49.0 3.89e-01 100.0% 66.3%
4249710 109.4.1.2144 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27737, PF30504 0.55 48.0 3.44e-01 99.1% 68.9%
3811016 109.4.1.1260 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, PPR_long 0.55 47.0 3.59e-01 97.2% 43.3%
3731650 176.1.1.0 ↗ alpha arrays › Annexin › Annexin › Annexin 0.54 38.0 4.14e-01 85.2% 91.8%
3215222 226.1.1.3 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › Skp1,Skp1_POZ 0.54 41.0 3.72e-01 80.6% 94.7%
5030078 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.52 41.0 3.04e-01 84.3% 72.5%
3768701 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 45.0 3.31e-01 99.1% 50.8%
4603334 7011.1.1.0 ↗ alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain 0.52 40.0 2.99e-01 83.3% 66.1%
4019468 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 42.0 4.16e-01 97.2% 89.4%
3348296 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 39.0 3.98e-01 84.3% 92.4%
D2 medium residues 199-246
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11443.14 best DUF2828 33.3 3.60e-08 100.0% 11.4%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2eqyA01 1.10.150.60 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › ARID DNA-binding domain 0.61 42.0 3.27e-01 72.9% 41.1%
1sg6A02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.61 42.0 2.87e-01 75.0% 59.9%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3247942 109.16.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › TROVE domain-like › TROVE domain-like › DUF2828 0.94 84.0 5.10e-01 100.0% 17.4%
3424971 109.16.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › TROVE domain-like › TROVE domain-like › DUF2828 0.87 76.0 4.59e-01 100.0% 16.2%
3501290 109.4.1.911 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG6_C 0.57 46.0 2.73e-01 100.0% 18.5%
3223457 101.1.2.661 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_9, POLR3C_WHD 0.53 39.0 2.48e-01 83.3% 18.6%