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OR354846.1__WNM54893.1__CoNPh23_CDS0030__00029
Bact-VirOR354846.1__WNM54893.1__CoNPh23_CDS0030__00029
Identity
- Accession:
- OR354846 ↗
- Kingdom:
- phage
Quality
90.6
mean pLDDT
Taxonomy
TaxID: 3076580
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-53
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06260.19 best | DUF1024 | 86.8 | 1.40e-24 | 100.0% | 58.3% |
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.90 | 82.0 | 6.11e-01 | 100.0% | 47.0% |
| 3fy6A01 | 3.30.2210.10 | Alpha Beta › 2-Layer Sandwich › Integron cassette protein fold › Integron cassette protein superfamily | 0.89 | 63.0 | 4.82e-01 | 74.5% | 38.3% |
| 6lumD01 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.88 | 69.0 | 5.06e-01 | 86.3% | 34.4% |
| 2yfaA02 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.83 | 72.0 | 5.45e-01 | 96.1% | 42.2% |
| 3tufA00 | 1.10.287.4300 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Stage III sporulation protein AH-like | 0.82 | 70.0 | 5.21e-01 | 90.2% | 40.0% |
| 4m0mA04 | 1.20.1270.440 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.82 | 66.0 | 4.95e-01 | 92.2% | 37.6% |
| 2gtsA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.80 | 67.0 | 5.89e-01 | 100.0% | 62.3% |
| 1hciA04 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.80 | 59.0 | 4.49e-01 | 78.4% | 86.8% |
| 3akjA02 | 1.10.1070.20 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › | 0.80 | 67.0 | 4.40e-01 | 96.1% | 23.4% |
| 2ynqB00 | 1.25.40.680 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain | 0.80 | 67.0 | 4.73e-01 | 92.2% | 31.1% |
| 2nnwA02 | 1.10.287.4070 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.79 | 70.0 | 5.19e-01 | 100.0% | 63.8% |
| 1l8dA00 | 1.10.287.510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.78 | 68.0 | 5.45e-01 | 100.0% | 54.4% |
| 3besR03 | 6.10.140.1480 | Special › Helix non-globular › Helix Hairpins › | 0.78 | 57.0 | 5.53e-01 | 82.4% | 71.4% |
| 1sxjB03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.75 | 54.0 | 4.45e-01 | 76.5% | 42.4% |
| 4hteA01 | 1.20.58.1730 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.75 | 65.0 | 4.74e-01 | 100.0% | 35.0% |
| 1g2rA00 | 3.30.1230.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like | 0.75 | 55.0 | 4.44e-01 | 78.4% | 50.0% |
| 2nq5A01 | 3.20.20.210 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.72 | 63.0 | 3.70e-01 | 98.0% | 90.1% |
| 3ismC01 | 1.25.40.240 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ku, C-terminal domain | 0.71 | 57.0 | 4.08e-01 | 90.2% | 31.2% |
| 2zxqA06 | 1.20.1270.70 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle | 0.69 | 48.0 | 4.48e-01 | 82.4% | 57.6% |
| 1b5lA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.69 | 56.0 | 3.93e-01 | 86.3% | 41.4% |
| 3n5lA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.69 | 56.0 | 5.45e-01 | 92.2% | 84.2% |
| 1f45B00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.66 | 59.0 | 4.36e-01 | 100.0% | 42.9% |
| 2wiyA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.66 | 54.0 | 3.27e-01 | 100.0% | 27.2% |
| 2iexA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.64 | 47.0 | 4.71e-01 | 78.4% | 78.4% |
| 1bvsA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.61 | 45.0 | 4.09e-01 | 82.4% | 58.6% |
| 2gwgA00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.58 | 43.0 | 2.68e-01 | 84.3% | 29.0% |
| 6b8hO01 | 1.10.520.20 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase | 0.57 | 39.0 | 3.27e-01 | 76.5% | 38.4% |
| 1l9lA00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.55 | 38.0 | 3.39e-01 | 70.6% | 48.6% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3267759 | 4.1.1.140 ↗ | beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom | 0.95 | 68.0 | 4.59e-01 | 74.5% | 23.7% |
| 3901306 | 621.1.1.1 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › GBP_C | 0.95 | 88.0 | 5.30e-01 | 100.0% | 17.3% |
| 5001687 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.94 | 66.0 | 6.03e-01 | 74.5% | 58.7% |
| 3956826 | 150.8.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE | 0.94 | 87.0 | 5.81e-01 | 100.0% | 30.0% |
| 3389059 | 4082.1.1.1 ↗ | alpha duplicates or obligate multimers › Hairy Orange domain › Hairy Orange domain › Hairy Orange domain › Hairy_orange | 0.91 | 76.0 | 7.44e-01 | 90.2% | 83.6% |
| 3263848 | 5069.1.3.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits | 0.91 | 79.0 | 6.16e-01 | 94.1% | 48.0% |
| 4460746 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.90 | 82.0 | 5.48e-01 | 100.0% | 28.3% |
| 4202292 | 570.1.1.1 ↗ | alpha arrays › Pre-protein crosslinking domain of SecA › Pre-protein crosslinking domain of SecA › Pre-protein crosslinking domain of SecA › SecA_PP_bind | 0.90 | 81.0 | 5.22e-01 | 100.0% | 24.2% |
| 3872599 | 109.4.1.1472 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tho2, Thoc2, THOC2_N | 0.89 | 83.0 | 4.56e-01 | 100.0% | 8.5% |
| 3774606 | 109.4.1.2221 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tho2, Thoc2 | 0.89 | 83.0 | 4.50e-01 | 100.0% | 7.3% |
| 4033037 | 632.19.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 | 0.89 | 70.0 | 6.25e-01 | 88.2% | 61.4% |
| 3921001 | 109.4.1.1472 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tho2, Thoc2, THOC2_N | 0.89 | 82.0 | 4.37e-01 | 100.0% | 5.2% |
| 3623057 | 2004.1.1.250 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd | 0.89 | 82.0 | 4.50e-01 | 100.0% | 8.1% |
| 4112673 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.88 | 80.0 | 5.35e-01 | 100.0% | 29.8% |
| 3582573 | 192.24.1.0 ↗ | alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain | 0.88 | 72.0 | 5.38e-01 | 86.3% | 60.0% |
| 3223457 | 101.1.2.661 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_9, POLR3C_WHD | 0.88 | 71.0 | 4.30e-01 | 86.3% | 23.6% |
| 3720226 | 3860.1.1.0 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm | 0.87 | 78.0 | 5.67e-01 | 100.0% | 37.8% |
| 3630104 | 192.24.1.6 ↗ | alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD | 0.87 | 71.0 | 4.10e-01 | 86.3% | 17.4% |
| 3738330 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.87 | 59.0 | 4.13e-01 | 74.5% | 25.7% |
| 4034213 | 632.2.1.5 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF1542 | 0.86 | 68.0 | 5.75e-01 | 88.2% | 53.8% |
| 4235299 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.86 | 76.0 | 5.13e-01 | 100.0% | 27.7% |
| 4340337 | 4990.1.1.1 ↗ | alpha arrays › Lipase chaperone LifO-like › Lipase chaperone LifO-like › Lipase chaperone LifO-like › Lipase_chap | 0.85 | 79.0 | 4.80e-01 | 100.0% | 19.6% |
| 4459730 | 4990.1.1.1 ↗ | alpha arrays › Lipase chaperone LifO-like › Lipase chaperone LifO-like › Lipase chaperone LifO-like › Lipase_chap | 0.85 | 77.0 | 4.73e-01 | 100.0% | 19.6% |
| 3967364 | 4990.1.1.1 ↗ | alpha arrays › Lipase chaperone LifO-like › Lipase chaperone LifO-like › Lipase chaperone LifO-like › Lipase_chap | 0.84 | 77.0 | 4.74e-01 | 100.0% | 20.7% |
| 3770414 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.83 | 76.0 | 5.90e-01 | 100.0% | 49.5% |
| 5018387 | 604.18.1.0 ↗ | alpha bundles › Spectrin repeat-like › Triple-helical domain in regulatory ATPase variant A (RavA) › Triple-helical domain in regulatory ATPase variant A (RavA) | 0.83 | 71.0 | 5.62e-01 | 98.0% | 47.6% |
| 3789508 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.83 | 64.0 | 5.68e-01 | 82.4% | 60.0% |
| 4293044 | 4990.1.1.1 ↗ | alpha arrays › Lipase chaperone LifO-like › Lipase chaperone LifO-like › Lipase chaperone LifO-like › Lipase_chap | 0.82 | 73.0 | 4.59e-01 | 98.0% | 20.4% |
| 4660205 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.82 | 73.0 | 5.33e-01 | 100.0% | 38.5% |
| 3214189 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.82 | 73.0 | 5.73e-01 | 100.0% | 50.5% |
| 4396574 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.82 | 70.0 | 4.81e-01 | 100.0% | 29.3% |
| 3181110 | 5086.1.1.110 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HisKA | 0.81 | 70.0 | 5.62e-01 | 100.0% | 50.5% |
| 223819 | 109.28.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › EssB extracellular domain › EssB extracellular domain › YukC | 0.80 | 67.0 | 4.74e-01 | 92.2% | 31.5% |
| 3457578 | 3846.1.1.0 ↗ | alpha bundles › IcmR › IcmR › IcmR | 0.78 | 57.0 | 6.02e-01 | 86.3% | 88.9% |
| 5006804 | 2007.1.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › GATase | 0.77 | 52.0 | 3.40e-01 | 72.5% | 16.9% |
| 53360 | 4990.1.1.0 ↗ | alpha arrays › Lipase chaperone LifO-like › Lipase chaperone LifO-like › Lipase chaperone LifO-like | 0.77 | 68.0 | 4.26e-01 | 100.0% | 18.7% |
| 4026047 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.77 | 67.0 | 5.60e-01 | 96.1% | 57.6% |
| 3511084 | 3922.1.1.225 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › DUF842 | 0.75 | 67.0 | 5.02e-01 | 100.0% | 63.2% |
| 4501780 | 310.2.1.5 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › DUF842 | 0.75 | 62.0 | 4.68e-01 | 98.0% | 37.6% |
| 3270696 | 604.7.1.1 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA | 0.75 | 66.0 | 5.23e-01 | 100.0% | 49.5% |
| 3930816 | 101.1.2.236 ↗ | alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD | 0.75 | 67.0 | 4.17e-01 | 100.0% | 33.1% |
| 3839497 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.75 | 64.0 | 5.50e-01 | 100.0% | 72.9% |
| 3886706 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.75 | 61.0 | 5.25e-01 | 90.2% | 57.5% |
| 3651880 | 192.8.1.401 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › BPS1 | 0.74 | 60.0 | 4.93e-01 | 98.0% | 50.0% |
| 4009690 | 7523.1.1.25 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Phosphonate-bd | 0.73 | 57.0 | 3.84e-01 | 86.3% | 23.1% |
| 3212006 | 601.24.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) › FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) | 0.73 | 66.0 | 4.82e-01 | 100.0% | 40.8% |
| 4968943 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.73 | 59.0 | 4.97e-01 | 90.2% | 52.9% |
| 3679700 | 601.33.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain | 0.72 | 53.0 | 4.14e-01 | 80.4% | 35.7% |
| 4946898 | 375.1.9.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase | 0.71 | 61.0 | 5.45e-01 | 98.0% | 66.7% |
| 5020110 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.71 | 59.0 | 4.84e-01 | 98.0% | 61.0% |
| 4034449 | 109.28.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › EssB extracellular domain › EssB extracellular domain › YukC | 0.70 | 59.0 | 4.27e-01 | 98.0% | 33.3% |