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OR354848.1__WNM55019.1__CoNPh25_CDS0014__00013
Bact-VirOR354848.1__WNM55019.1__CoNPh25_CDS0014__00013
Identity
- Accession:
- OR354848 ↗
- Kingdom:
- phage
Quality
83.8
mean pLDDT
Taxonomy
TaxID: 3076582
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-74
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1f2uB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.68 | 53.0 | 4.22e-01 | 91.5% | 42.1% |
| 2mkyA00 | 3.30.70.1530 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 | 0.64 | 40.0 | 4.37e-01 | 90.1% | 77.6% |
| 1f5aA02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.64 | 55.0 | 4.28e-01 | 95.8% | 89.1% |
| 1zswA02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.61 | 33.0 | 2.58e-01 | 87.3% | 24.0% |
| 1pa4A00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.61 | 49.0 | 4.49e-01 | 88.7% | 68.8% |
| 2v1xA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 39.0 | 3.40e-01 | 100.0% | 41.8% |
| 2zdiC00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.60 | 42.0 | 3.25e-01 | 73.2% | 91.9% |
| 1hbxA01 | 3.40.1810.10 | Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box | 0.59 | 43.0 | 4.35e-01 | 90.1% | 76.1% |
| 1ckeA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 40.0 | 2.87e-01 | 70.4% | 57.1% |
| 1tuwA00 | 3.30.70.1090 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel. | 0.57 | 41.0 | 3.72e-01 | 91.5% | 53.8% |
| 3mahA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.57 | 37.0 | 3.76e-01 | 85.9% | 68.1% |
| 1vehA01 | 3.30.300.130 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Fe-S cluster assembly (FSCA) | 0.56 | 36.0 | 3.61e-01 | 100.0% | 62.7% |
| 1zcdA00 | 1.20.1530.10 | Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain | 0.55 | 47.0 | 3.03e-01 | 98.6% | 55.3% |
| 4zudA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.54 | 47.0 | 3.23e-01 | 100.0% | 99.6% |
| 3nrkA02 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.52 | 43.0 | 3.81e-01 | 93.0% | 84.4% |
| 6f7bA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.52 | 40.0 | 2.71e-01 | 84.5% | 21.6% |
| 4lmoA00 | 1.10.132.70 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.52 | 42.0 | 2.96e-01 | 93.0% | 37.1% |
| 1ydmB00 | 3.40.50.10420 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NagB/RpiA/CoA transferase-like | 0.51 | 43.0 | 3.29e-01 | 95.8% | 75.3% |
| 3l0aA00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.50 | 42.0 | 2.98e-01 | 100.0% | 77.8% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3587631 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.73 | 43.0 | 3.38e-01 | 94.4% | 30.0% |
| 3391166 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.72 | 52.0 | 3.18e-01 | 74.6% | 27.3% |
| 5061627 | 5073.1.2.0 ↗ | alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Copper efflux ATPase transmembrane domain | 0.68 | 55.0 | 3.83e-01 | 88.7% | 32.6% |
| 4271651 | 327.10.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › RBFA | 0.64 | 54.0 | 4.69e-01 | 100.0% | 60.0% |
| 4002132 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.62 | 56.0 | 3.58e-01 | 100.0% | 94.2% |
| 3838123 | 872.10.1.0 ↗ | a+b two layers › Dodecin subunit-like › Secreted protein HP1454 N-terminal domain › Secreted protein HP1454 N-terminal domain | 0.61 | 48.0 | 4.47e-01 | 84.5% | 86.7% |
| 5031156 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.61 | 34.0 | 3.26e-01 | 94.4% | 46.3% |
| 3493963 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.59 | 41.0 | 3.62e-01 | 71.8% | 94.0% |
| 4506641 | 327.10.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related | 0.59 | 47.0 | 4.50e-01 | 91.5% | 76.5% |
| 3989790 | 3433.1.2.1 ↗ | a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain › ParB_dimer | 0.58 | 38.0 | 4.23e-01 | 98.6% | 98.0% |
| 3993658 | 221.1.1.170 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UBL_ZFAND1 | 0.57 | 40.0 | 3.62e-01 | 94.4% | 51.4% |
| 4314239 | 3433.1.2.1 ↗ | a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain › ParB_dimer | 0.56 | 38.0 | 4.17e-01 | 94.4% | 100.0% |
| 3195155 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.56 | 39.0 | 3.98e-01 | 87.3% | 75.7% |
| 4799073 | 309.1.1.4 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C | 0.56 | 48.0 | 4.36e-01 | 100.0% | 75.5% |
| 3410506 | 304.9.1.95 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › DUF4780 | 0.55 | 39.0 | 3.74e-01 | 91.5% | 63.5% |
| 5058513 | 7012.1.1.1 ↗ | a+b complex topology › Monotopic phosphoglycosyl transferase (PGT)-like › Monotopic phosphoglycosyl transferase (PGT)-like › Monotopic phosphoglycosyl transferase (PGT)-like › Bac_transf | 0.54 | 44.0 | 3.30e-01 | 94.4% | 100.0% |
| 4992139 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.54 | 39.0 | 3.31e-01 | 76.1% | 73.0% |
| 5011351 | 327.18.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › 40S ribosomal protein S7-A › 40S ribosomal protein S7-A | 0.53 | 36.0 | 3.75e-01 | 78.9% | 78.5% |
| 5000798 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.53 | 49.0 | 3.52e-01 | 100.0% | 55.7% |
| 5060820 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.52 | 43.0 | 2.66e-01 | 94.4% | 20.4% |
| 3234725 | 387.1.5.13 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › Antimicrobial25 | 0.52 | 37.0 | 3.85e-01 | 90.1% | 84.1% |
| 5082784 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.51 | 40.0 | 3.78e-01 | 91.5% | 87.8% |
| 3553091 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 42.0 | 3.09e-01 | 93.0% | 59.0% |
| 5053835 | 243.6.1.5 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › UPF0113_N | 0.50 | 38.0 | 3.51e-01 | 83.1% | 95.8% |
| 5005723 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.50 | 45.0 | 3.00e-01 | 98.6% | 94.6% |