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OR354848.1__WNM55073.1__CoNPh25_CDS0068__00067
Bact-VirOR354848.1__WNM55073.1__CoNPh25_CDS0068__00067
Identity
- Accession:
- OR354848 ↗
- Kingdom:
- phage
Quality
85.0
mean pLDDT
Taxonomy
TaxID: 3076582
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-67
Domain cluster:
representative
CATH (47)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3tf8B00 | 3.90.1520.10 | Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain | 0.64 | 45.0 | 3.22e-01 | 75.4% | 45.7% |
| 2ymaA00 | 3.10.310.60 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.64 | 45.0 | 3.40e-01 | 73.7% | 65.2% |
| 2gu1A01 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 42.0 | 3.73e-01 | 73.7% | 45.5% |
| 3mmyA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.63 | 49.0 | 3.06e-01 | 89.5% | 23.2% |
| 7mhwA01 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.63 | 53.0 | 4.68e-01 | 100.0% | 93.3% |
| 3fqmA02 | 2.20.25.220 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C virus NS5A, 1B domain | 0.62 | 44.0 | 3.94e-01 | 77.2% | 93.0% |
| 3c8dA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 46.0 | 3.60e-01 | 80.7% | 93.1% |
| 2v95A02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.61 | 43.0 | 3.42e-01 | 77.2% | 65.9% |
| 4esnA00 | 2.60.320.10 | Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain | 0.61 | 46.0 | 4.22e-01 | 96.5% | 62.8% |
| 1lc5A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.60 | 49.0 | 3.91e-01 | 94.7% | 59.2% |
| 5cw7B00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.60 | 40.0 | 3.42e-01 | 77.2% | 42.6% |
| 2if7A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 52.0 | 4.35e-01 | 100.0% | 55.8% |
| 6vudA02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.60 | 42.0 | 3.89e-01 | 75.4% | 93.3% |
| 7u5bJ01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.59 | 42.0 | 3.79e-01 | 75.4% | 73.1% |
| 2lmcB00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.59 | 42.0 | 4.14e-01 | 77.2% | 82.0% |
| 2eaqA00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.58 | 43.0 | 3.88e-01 | 86.0% | 80.9% |
| 3jqwC00 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 37.0 | 2.94e-01 | 100.0% | 30.6% |
| 2dluA00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.58 | 46.0 | 3.77e-01 | 89.5% | 62.2% |
| 6eziA00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.58 | 44.0 | 3.92e-01 | 86.0% | 76.7% |
| 1wihA00 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.58 | 40.0 | 3.64e-01 | 75.4% | 89.3% |
| 3u28C00 | 2.40.10.230 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain | 0.58 | 44.0 | 3.80e-01 | 100.0% | 52.2% |
| 3dlbA04 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.57 | 44.0 | 3.24e-01 | 89.5% | 58.9% |
| 6hyfA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 44.0 | 3.62e-01 | 84.2% | 81.1% |
| 3f1sB02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.56 | 40.0 | 3.44e-01 | 75.4% | 81.7% |
| 3l4jA04 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.56 | 44.0 | 3.80e-01 | 93.0% | 92.2% |
| 1egxA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 45.0 | 3.79e-01 | 100.0% | 82.6% |
| 2l5qA01 | 2.30.30.730 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 41.0 | 4.26e-01 | 100.0% | 92.0% |
| 5yjwA00 | 3.50.50.100 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › | 0.55 | 44.0 | 2.69e-01 | 96.5% | 53.5% |
| 1qg3A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 43.0 | 3.60e-01 | 87.7% | 88.5% |
| 2mm0A00 | 2.10.70.110 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.55 | 45.0 | 4.42e-01 | 100.0% | 90.6% |
| 2e4mC00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.55 | 45.0 | 3.53e-01 | 100.0% | 93.7% |
| 3foeA02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.54 | 42.0 | 4.05e-01 | 89.5% | 88.4% |
| 1stzA03 | 3.30.390.60 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Heat-inducible transcription repressor hrca homolog; domain 3 | 0.53 | 38.0 | 3.36e-01 | 77.2% | 85.4% |
| 3u97A00 | 3.10.450.530 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system | 0.53 | 38.0 | 3.48e-01 | 77.2% | 54.5% |
| 2lg1A02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 44.0 | 3.64e-01 | 100.0% | 77.4% |
| 2gzvA01 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.53 | 42.0 | 3.82e-01 | 94.7% | 75.6% |
| 5bp3B00 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.53 | 43.0 | 2.79e-01 | 91.2% | 62.1% |
| 4s21B02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 39.0 | 3.24e-01 | 86.0% | 52.9% |
| 2hjjA00 | 3.30.160.130 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › ykff protein like domains | 0.52 | 41.0 | 3.99e-01 | 96.5% | 78.8% |
| 1vr5A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 42.0 | 3.18e-01 | 93.0% | 83.7% |
| 3njcA00 | 3.30.1380.20 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 | 0.52 | 35.0 | 2.75e-01 | 73.7% | 54.9% |
| 2vb6A01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.52 | 41.0 | 4.17e-01 | 98.2% | 92.6% |
| 2v6eA03 | 1.10.443.30 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Telomere resolvase | 0.51 | 41.0 | 2.79e-01 | 89.5% | 47.6% |
| 5ic7A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 45.0 | 2.78e-01 | 100.0% | 30.0% |
| 2qyuA03 | 3.40.1850.10 | Alpha Beta › 3-Layer(aba) Sandwich › HECT-like ubiquitin ligase fold › HECT-like ubiquitin ligase | 0.51 | 41.0 | 3.83e-01 | 96.5% | 78.7% |
| 3pmiA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 39.0 | 3.84e-01 | 96.5% | 78.5% |
| 7onnA01 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.50 | 39.0 | 3.79e-01 | 93.0% | 92.6% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3619269 | 2484.6.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Periplasmic domain of ExbD/TolR › Periplasmic domain of ExbD/TolR | 0.73 | 61.0 | 5.10e-01 | 93.0% | 89.0% |
| 3470093 | 3696.1.1.1 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › HARP | 0.66 | 50.0 | 4.89e-01 | 86.0% | 100.0% |
| 4526098 | 3696.1.1.1 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › HARP | 0.65 | 53.0 | 4.87e-01 | 94.7% | 93.8% |
| 4960956 | 12.5.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related | 0.65 | 54.0 | 3.95e-01 | 94.7% | 53.8% |
| 4050042 | 4.1.1.441 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26332 | 0.64 | 56.0 | 5.07e-01 | 100.0% | 91.3% |
| 3241930 | 881.1.1.20 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF3557 | 0.64 | 44.0 | 3.51e-01 | 73.7% | 36.7% |
| 1649977 | 101.15.1.2 ↗ | alpha arrays › HTH › LysM domain › LysM domain › OapA | 0.63 | 42.0 | 3.71e-01 | 73.7% | 44.4% |
| 1512998 | 3953.1.1.1 ↗ | a+b two layers › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3_N | 0.62 | 42.0 | 3.70e-01 | 75.4% | 47.1% |
| 3883697 | 389.1.2.1 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi | 0.61 | 44.0 | 4.66e-01 | 91.2% | 88.0% |
| 3394861 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.60 | 42.0 | 2.95e-01 | 73.7% | 34.9% |
| 3728082 | 4357.1.1.7 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › DUF7131 | 0.60 | 43.0 | 3.83e-01 | 75.4% | 70.0% |
| 3800776 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 45.0 | 2.96e-01 | 82.5% | 36.8% |
| 4529966 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.59 | 48.0 | 3.00e-01 | 93.0% | 30.7% |
| 3389922 | 7.1.1.10 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 | 0.59 | 44.0 | 3.76e-01 | 84.2% | 66.0% |
| 401494 | 10.32.1.19 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PPC | 0.58 | 37.0 | 2.94e-01 | 100.0% | 30.6% |
| 3832227 | 4019.1.1.1 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase | 0.58 | 46.0 | 2.87e-01 | 94.7% | 15.8% |
| 3908614 | 11.1.1.588 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fibulin_C | 0.57 | 42.0 | 3.22e-01 | 80.7% | 92.9% |
| 3262013 | 3794.1.1.3 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › ACCA_BT | 0.56 | 48.0 | 3.71e-01 | 96.5% | 63.1% |
| 3262843 | 10.41.1.1 ↗ | beta sandwiches › jelly-roll › Protein Hikeshi jelly-roll domain › Protein Hikeshi jelly-roll domain › Hikeshi-like_N | 0.56 | 39.0 | 3.31e-01 | 75.4% | 96.1% |
| 4878007 | 101.1.2.9 ↗ | alpha arrays › HTH › HTH › winged helix domain › DNA_topoisoIV | 0.55 | 45.0 | 3.46e-01 | 94.7% | 65.5% |
| 4007854 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.54 | 37.0 | 3.31e-01 | 73.7% | 47.1% |
| 1712014 | 375.1.1.66 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TOP1_ZnF | 0.54 | 38.0 | 3.71e-01 | 75.4% | 92.3% |
| 3737421 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.54 | 44.0 | 2.73e-01 | 96.5% | 39.7% |
| 4941159 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.54 | 41.0 | 3.41e-01 | 87.7% | 45.7% |
| 3632159 | 708.1.2.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like | 0.53 | 44.0 | 3.34e-01 | 100.0% | 80.0% |
| 4887383 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 35.0 | 3.93e-01 | 71.9% | 93.0% |
| 5048051 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.52 | 46.0 | 4.01e-01 | 100.0% | 67.4% |
| 3789341 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.52 | 41.0 | 2.68e-01 | 96.5% | 74.1% |
| 3509040 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.52 | 43.0 | 2.81e-01 | 93.0% | 20.7% |
| 1283885 | 7.1.1.1 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ | 0.51 | 36.0 | 3.19e-01 | 82.5% | 47.3% |