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OR354850.1__WNM55294.1__CoNPh27_CDS0028__00028

Bact-Vir

OR354850.1__WNM55294.1__CoNPh27_CDS0028__00028

Identity

Accession:
OR354850 ↗
Kingdom:
phage

Quality

85.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-62
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fnaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 61.0 5.55e-01 89.1% 64.4%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 62.0 5.00e-01 89.1% 45.7%
1k78I00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 56.0 5.51e-01 76.4% 84.5%
2cfxA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 58.0 6.11e-01 94.5% 90.0%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.73 61.0 5.13e-01 96.4% 61.9%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 58.0 5.22e-01 89.1% 64.0%
3eyyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 58.0 5.11e-01 89.1% 59.8%
2fe3B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 56.0 4.93e-01 89.1% 58.8%
1u78A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 49.0 5.27e-01 80.0% 93.3%
1mzbA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 55.0 4.84e-01 89.1% 74.4%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 53.0 4.81e-01 96.4% 62.8%
4ragA02 1.10.10.430 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Phosphatase 2C, C-terminal domain suprefamily 0.67 51.0 4.78e-01 83.6% 77.9%
3ol4A02 1.10.10.2390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.67 49.0 4.81e-01 81.8% 86.7%
4ye6A02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.65 49.0 4.89e-01 83.6% 98.3%
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.65 51.0 4.59e-01 89.1% 82.7%
2i6xA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.64 50.0 4.68e-01 89.1% 74.6%
4dccA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.64 51.0 4.67e-01 89.1% 87.8%
1p6rA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 55.0 4.84e-01 100.0% 91.5%
2hzdA00 6.10.20.40 Special › Helix non-globular › Arc Repressor Mutant, subunit A › TEA/ATTS domain 0.62 48.0 4.34e-01 89.1% 78.0%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 50.0 4.28e-01 94.5% 76.1%
3jyoA01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.61 45.0 3.37e-01 80.0% 97.8%
1stzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 43.0 3.87e-01 89.1% 54.1%
3eoqB02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.58 43.0 3.05e-01 80.0% 72.7%
4q6bA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 44.0 3.10e-01 87.3% 88.6%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 47.0 4.11e-01 94.5% 74.4%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.58 49.0 4.17e-01 98.2% 72.3%
2b8iA00 1.20.1280.100 Mainly Alpha › Up-down Bundle › Monooxygenase › Pas factor, saposin domain 0.57 46.0 4.20e-01 94.5% 87.0%
3kbbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 43.0 4.07e-01 89.1% 84.3%
2lbfB01 1.10.10.1410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.56 46.0 4.34e-01 96.4% 94.2%
7p2yd01 1.10.520.20 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase 0.55 46.0 3.88e-01 96.4% 60.6%
1n5uA01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.53 42.0 3.55e-01 90.9% 56.3%
1vfiA00 1.10.246.100 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Vanadium-binding protein 2 0.51 36.0 3.11e-01 76.4% 81.1%
2b4lA02 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.50 42.0 3.13e-01 100.0% 84.1%
ECOD (87)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3909922 101.1.1.12 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 0.89 70.0 7.29e-01 83.6% 98.0%
3603740 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.87 64.0 5.87e-01 90.9% 61.4%
3908865 101.1.2.536 alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc3_2 0.87 68.0 6.80e-01 83.6% 89.1%
5052263 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.84 67.0 5.97e-01 89.1% 62.7%
4978898 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.84 63.0 6.77e-01 80.0% 100.0%
3198858 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.84 65.0 5.99e-01 83.6% 70.0%
4014657 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.84 65.0 6.55e-01 89.1% 83.6%
3879117 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.84 65.0 6.53e-01 83.6% 89.1%
3363421 101.1.2.730 alpha arrays › HTH › HTH › winged helix domain › Eaf7 0.83 66.0 6.23e-01 85.5% 90.8%
3884711 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.83 64.0 6.03e-01 83.6% 75.4%
3723123 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 65.0 6.32e-01 89.1% 78.3%
3455132 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.82 76.0 5.72e-01 100.0% 85.0%
4014101 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 64.0 5.51e-01 85.5% 58.8%
3893171 101.1.1.12 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 0.81 63.0 6.13e-01 83.6% 81.7%
3203378 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.81 61.0 5.84e-01 81.8% 75.4%
3636036 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 67.0 6.57e-01 100.0% 83.3%
3933926 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 62.0 5.91e-01 83.6% 75.4%
5007660 101.1.1.187 alpha arrays › HTH › HTH › Three-helical HTH › HTH_33 0.80 62.0 5.85e-01 83.6% 75.4%
5003693 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 61.0 5.81e-01 83.6% 75.4%
5008720 101.1.1.548 alpha arrays › HTH › HTH › Three-helical HTH › HTH_32 0.80 61.0 5.82e-01 83.6% 75.4%
4979322 101.1.2.140 alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.79 67.0 6.20e-01 92.7% 72.9%
3326259 1091.1.1.0 alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 0.79 60.0 6.31e-01 81.8% 98.0%
5021354 101.1.2.619 alpha arrays › HTH › HTH › winged helix domain › HTH_33 0.79 60.0 5.74e-01 83.6% 75.4%
3958566 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.79 60.0 5.12e-01 83.6% 54.4%
3997947 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 56.0 5.85e-01 76.4% 92.0%
3617137 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 64.0 6.49e-01 89.1% 94.5%
4215069 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 60.0 5.17e-01 89.1% 52.2%
3973616 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 60.0 5.89e-01 83.6% 78.3%
4031678 101.1.2.20 alpha arrays › HTH › HTH › winged helix domain › Arg_repressor 0.78 59.0 5.65e-01 83.6% 75.4%
3712226 101.1.1.67 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 0.78 66.0 5.48e-01 100.0% 54.7%
3334694 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.77 70.0 6.01e-01 100.0% 84.7%
4274627 101.1.1.266 alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.77 58.0 5.67e-01 89.1% 76.7%
4994794 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 63.0 5.64e-01 89.1% 65.3%
3980764 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 57.0 6.05e-01 81.8% 100.0%
3467989 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 62.0 6.05e-01 87.3% 86.7%
3910504 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 58.0 5.96e-01 83.6% 94.0%
3417440 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.76 62.0 4.60e-01 89.1% 88.1%
4953748 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 59.0 5.34e-01 89.1% 62.7%
3812018 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.76 65.0 5.70e-01 94.5% 78.8%
3715143 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 65.0 5.72e-01 94.5% 65.0%
5041677 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 62.0 4.87e-01 89.1% 44.5%
4926838 101.43.1.0 alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.75 62.0 5.92e-01 94.5% 78.5%
3334149 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 61.0 6.17e-01 89.1% 96.4%
3935353 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 61.0 5.31e-01 89.1% 59.0%
4952347 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 56.0 4.90e-01 87.3% 52.9%
4927588 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 65.0 5.95e-01 100.0% 84.0%
3787144 101.1.1.8 alpha arrays › HTH › HTH › Three-helical HTH › TEA 0.75 64.0 5.76e-01 94.5% 90.7%
4961853 101.1.2.54 alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.75 61.0 5.48e-01 89.1% 65.3%
5049118 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 59.0 5.60e-01 89.1% 73.8%
3597185 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 63.0 5.42e-01 94.5% 67.0%
3706618 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.75 63.0 5.68e-01 92.7% 68.0%
3958858 592.2.1.0 alpha arrays › PWI domain-like › YugE-like › YugE-like 0.75 64.0 4.75e-01 92.7% 94.6%
5053360 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 61.0 5.35e-01 100.0% 60.0%
5023957 101.1.2.280 alpha arrays › HTH › HTH › winged helix domain › HTH_12 0.75 60.0 5.33e-01 89.1% 63.7%
5046131 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 63.0 5.13e-01 92.7% 54.0%
5035624 101.1.2.54 alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.74 60.0 5.20e-01 89.1% 58.8%
3962597 101.1.3.13 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Transposase_mut 0.74 56.0 5.42e-01 89.1% 72.3%
4190132 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 56.0 5.80e-01 85.5% 90.0%
3243611 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 57.0 5.92e-01 89.1% 92.0%
4631918 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 60.0 5.41e-01 89.1% 65.3%
3958041 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 56.0 5.39e-01 89.1% 72.3%
3957316 101.1.1.266 alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.74 56.0 5.38e-01 89.1% 72.3%
4013698 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 62.0 5.91e-01 94.5% 83.1%
3450729 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 58.0 5.42e-01 89.1% 78.6%
4966213 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 55.0 5.27e-01 83.6% 75.4%
4501343 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.73 56.0 5.69e-01 83.6% 87.3%
5083383 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 59.0 5.84e-01 94.5% 85.0%
3955434 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 53.0 5.46e-01 80.0% 94.0%
3620979 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 60.0 6.04e-01 92.7% 92.7%
3738343 101.1.1.79 alpha arrays › HTH › HTH › Three-helical HTH › HTH_ABP1_N 0.72 59.0 5.75e-01 94.5% 83.3%
5028427 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.72 59.0 4.73e-01 89.1% 49.5%
5070167 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 56.0 5.64e-01 85.5% 89.1%
4014609 101.1.1.79 alpha arrays › HTH › HTH › Three-helical HTH › HTH_ABP1_N 0.72 59.0 5.58e-01 94.5% 76.9%
5006610 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 54.0 5.33e-01 83.6% 78.3%
5046292 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 58.0 5.15e-01 94.5% 62.5%
4978899 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 61.0 5.40e-01 98.2% 95.0%
3709551 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 59.0 5.77e-01 94.5% 86.7%
4929815 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 60.0 5.75e-01 100.0% 96.9%
3453546 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.70 55.0 5.28e-01 89.1% 83.1%
5011344 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 56.0 5.33e-01 89.1% 75.4%
4958195 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 52.0 5.23e-01 90.9% 89.1%
3350998 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.67 59.0 5.81e-01 100.0% 91.7%
5057164 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 58.0 4.79e-01 98.2% 78.0%
3609557 101.1.2.127 alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.67 53.0 4.48e-01 89.1% 51.6%
3228613 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.66 53.0 4.41e-01 92.7% 69.5%
4953119 101.1.2.805 alpha arrays › HTH › HTH › winged helix domain › PF26350 0.65 54.0 3.89e-01 100.0% 33.9%
3243067 101.1.2.577 alpha arrays › HTH › HTH › winged helix domain › SPK 0.61 50.0 4.00e-01 92.7% 67.0%
D2 medium residues 72-170
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13392.13 best HNH_3 50.4 1.90e-13 45.5% 87.0%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM01 3.90.75.20 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › 0.79 58.0 5.71e-01 80.8% 71.7%
1a73A00 3.90.75.10 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › Homing Intron 3 (I-ppo) Encoded Endonuclease; Chain A 0.63 53.0 4.45e-01 89.9% 57.4%
2qgpA00 1.10.30.50 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › 0.59 46.0 5.03e-01 97.0% 98.8%
3m7kA00 3.30.40.220 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.54 47.0 4.23e-01 99.0% 73.9%
4iwxA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 28.0 2.76e-01 70.7% 45.0%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3266965 378.1.2.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › Inactive Tox-GHH domain of teneurin › HNH_3 0.89 57.0 7.10e-01 70.7% 100.0%
3965202 378.1.1.19 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_3 0.88 58.0 5.55e-01 77.8% 60.0%
3586841 378.1.1.7 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › NUMOD4,HNH_3 0.79 59.0 5.59e-01 80.8% 66.1%
3539740 378.1.1.19 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_3 0.77 61.0 5.60e-01 82.8% 68.0%
5053631 378.1.1.19 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_3 0.75 61.0 5.87e-01 84.8% 94.5%
4303143 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.73 41.0 4.43e-01 70.7% 64.7%
89916 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.63 53.0 4.46e-01 89.9% 57.4%
8233 378.1.1.6 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › zf-His_Me_endon 0.63 53.0 4.45e-01 89.9% 57.4%
4949181 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.62 45.0 5.11e-01 83.8% 100.0%
5019258 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.59 45.0 4.93e-01 88.9% 100.0%
3695527 378.1.1.6 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › zf-His_Me_endon 0.58 46.0 4.34e-01 85.9% 86.7%
3687790 7579.1.1.1 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase 0.54 40.0 2.53e-01 79.8% 56.9%
3307439 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.53 44.0 4.13e-01 89.9% 78.7%
3387892 2004.1.1.242 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF2972 0.52 37.0 2.60e-01 75.8% 26.1%
2449258 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.52 43.0 3.67e-01 90.9% 82.9%
D3 medium residues 177-246
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2od5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 59.0 5.38e-01 78.6% 65.9%
1aoyA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 54.0 5.27e-01 74.3% 78.2%
2p5kA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 54.0 5.64e-01 74.3% 95.2%
2fnaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 54.0 5.41e-01 75.7% 79.5%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 57.0 4.94e-01 80.0% 68.6%
3eyyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 53.0 5.04e-01 74.3% 76.8%
2m8gX00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.74 49.0 4.96e-01 72.9% 68.6%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 53.0 4.55e-01 77.1% 59.8%
4rayA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 51.0 4.77e-01 75.7% 72.9%
3e7lA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 47.0 4.98e-01 72.9% 81.7%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 51.0 5.04e-01 80.0% 85.3%
1mzbA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 49.0 4.66e-01 77.1% 75.6%
3e3vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 47.0 5.19e-01 72.9% 98.1%
5nl9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 48.0 4.62e-01 78.6% 75.0%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 48.0 4.43e-01 77.1% 71.7%
3ol4A02 1.10.10.2390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.66 46.0 4.90e-01 74.3% 100.0%
1zelA01 3.90.56.20 Alpha Beta › Alpha-Beta Complex › Phenol Hydroxylase P2 Protein › replication protein C, winged helix domain 0.66 47.0 4.24e-01 75.7% 57.1%
2fmlB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 46.0 4.76e-01 72.9% 92.2%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 47.0 4.40e-01 78.6% 72.2%
2l7kA00 1.10.10.1850 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sporulation protein-like 0.62 42.0 4.09e-01 70.0% 85.5%
1fmjA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 46.0 3.01e-01 84.3% 90.4%
4dccA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.58 46.0 4.56e-01 90.0% 81.1%
3s6jE02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.57 40.0 4.03e-01 84.3% 73.9%
5deqB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 46.0 4.42e-01 91.4% 98.8%
3kbbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 40.0 4.05e-01 90.0% 77.1%
2qsrA01 3.90.1150.50 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain 0.56 42.0 3.31e-01 82.9% 81.9%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.55 44.0 4.06e-01 90.0% 95.7%
1wj5A01 1.10.10.980 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › CST, Suppressor of Cdc13 homolog, complex subunit STN1, N-terminal domain 0.54 41.0 3.76e-01 85.7% 89.8%
3lcrB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 40.0 2.72e-01 84.3% 40.3%
3hc7A02 1.10.10.1120 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Lysin B, C-terminal linker domain 0.51 39.0 4.08e-01 94.3% 96.8%
1sy7A02 1.20.1370.20 Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › Catalase, four-helical domain 0.51 33.0 3.46e-01 77.1% 75.0%
1ax8A00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.50 38.0 3.21e-01 84.3% 88.5%
ECOD (83)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3908865 101.1.2.536 alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc3_2 0.86 60.0 6.65e-01 71.4% 96.4%
4129352 101.1.1.32 alpha arrays › HTH › HTH › Three-helical HTH › Sigma54_DBD 0.84 62.0 6.49e-01 77.1% 90.8%
3387028 101.1.2.62 alpha arrays › HTH › HTH › winged helix domain › Sigma54_DBD 0.84 63.0 6.32e-01 78.6% 95.7%
3203378 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.83 60.0 6.27e-01 75.7% 84.6%
3724068 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.83 58.0 6.39e-01 72.9% 98.2%
3198858 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.83 61.0 6.15e-01 77.1% 80.0%
3692546 101.1.1.256 alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.82 56.0 6.37e-01 70.0% 100.0%
3632862 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 61.0 5.21e-01 78.6% 89.1%
3933926 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 60.0 6.25e-01 77.1% 86.2%
5052263 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.81 59.0 5.78e-01 75.7% 85.3%
4380839 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 60.0 5.85e-01 77.1% 86.7%
4014609 101.1.1.79 alpha arrays › HTH › HTH › Three-helical HTH › HTH_ABP1_N 0.81 56.0 5.78e-01 71.4% 84.6%
4926838 101.43.1.0 alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.80 55.0 5.73e-01 85.7% 76.9%
3893171 101.1.1.12 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 0.80 59.0 6.28e-01 77.1% 93.3%
3910504 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 55.0 6.29e-01 72.9% 100.0%
4129575 101.1.1.187 alpha arrays › HTH › HTH › Three-helical HTH › HTH_33 0.80 60.0 6.27e-01 80.0% 100.0%
3884711 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 60.0 6.18e-01 80.0% 87.7%
3590474 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 53.0 4.93e-01 70.0% 58.8%
5013440 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 55.0 4.35e-01 74.3% 45.7%
4977905 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 55.0 5.56e-01 74.3% 82.9%
4031678 101.1.2.20 alpha arrays › HTH › HTH › winged helix domain › Arg_repressor 0.77 56.0 5.85e-01 77.1% 95.4%
5021354 101.1.2.619 alpha arrays › HTH › HTH › winged helix domain › HTH_33 0.77 56.0 5.86e-01 77.1% 86.2%
4952808 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 57.0 6.32e-01 78.6% 100.0%
3189669 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 59.0 6.00e-01 92.9% 81.4%
3973616 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 57.0 6.09e-01 82.9% 91.7%
4596907 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 64.0 6.41e-01 90.0% 98.6%
4968187 101.1.2.619 alpha arrays › HTH › HTH › winged helix domain › HTH_33 0.77 57.0 5.87e-01 78.6% 100.0%
3969119 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.77 54.0 5.98e-01 74.3% 98.2%
3958566 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.76 53.0 4.90e-01 72.9% 68.9%
4963095 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.76 54.0 4.64e-01 74.3% 57.8%
5029224 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 52.0 5.54e-01 85.7% 83.3%
3957333 101.43.1.2 alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain › Transposase_mut 0.76 50.0 5.38e-01 81.4% 81.0%
5008720 101.1.1.548 alpha arrays › HTH › HTH › Three-helical HTH › HTH_32 0.76 56.0 5.81e-01 78.6% 87.7%
5041315 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.76 55.0 4.88e-01 77.1% 69.0%
4961853 101.1.2.54 alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.76 53.0 5.25e-01 74.3% 78.7%
5050956 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.75 56.0 3.61e-01 80.0% 84.0%
3957316 101.1.1.266 alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.75 49.0 5.08e-01 82.9% 72.3%
5023957 101.1.2.280 alpha arrays › HTH › HTH › winged helix domain › HTH_12 0.75 53.0 5.10e-01 74.3% 80.0%
5003693 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 56.0 5.79e-01 80.0% 87.7%
5057164 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 52.0 4.61e-01 72.9% 63.0%
4631918 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 53.0 5.21e-01 75.7% 78.7%
5078617 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 55.0 4.94e-01 78.6% 64.2%
5022936 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 51.0 4.43e-01 72.9% 61.8%
3961415 2484.1.1.199 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.74 54.0 3.52e-01 78.6% 85.9%
4997662 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 54.0 4.61e-01 77.1% 57.3%
4929599 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.73 63.0 4.33e-01 95.7% 100.0%
5056734 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 51.0 4.36e-01 74.3% 54.8%
3506369 2484.1.1.199 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.73 55.0 3.58e-01 81.4% 85.2%
4026717 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 52.0 5.23e-01 75.7% 87.1%
5070167 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 53.0 5.84e-01 81.4% 100.0%
5035624 101.1.2.54 alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.72 53.0 5.04e-01 80.0% 83.5%
3519342 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.72 49.0 5.38e-01 71.4% 96.4%
5076211 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 51.0 4.39e-01 75.7% 50.9%
5030817 101.1.2.54 alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.71 53.0 4.36e-01 80.0% 46.9%
5027917 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.71 56.0 3.86e-01 85.7% 80.0%
4934021 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 54.0 4.52e-01 81.4% 55.0%
5014345 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.71 53.0 4.91e-01 80.0% 78.9%
5028427 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.71 52.0 4.60e-01 78.6% 62.9%
5011344 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 51.0 5.28e-01 75.7% 87.7%
5011846 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 50.0 5.06e-01 74.3% 81.4%
4981859 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 49.0 5.07e-01 75.7% 90.8%
4934296 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 49.0 4.31e-01 75.7% 67.6%
4967950 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 51.0 4.72e-01 80.0% 78.9%
5080146 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.68 50.0 4.51e-01 80.0% 71.0%
3350998 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.68 52.0 5.61e-01 92.9% 96.7%
3509166 101.1.1.244 alpha arrays › HTH › HTH › Three-helical HTH › HTH_TIMELESS 0.67 51.0 5.12e-01 80.0% 88.6%
3822574 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 48.0 4.34e-01 78.6% 70.5%
3215919 101.1.1.264 alpha arrays › HTH › HTH › Three-helical HTH › SPK 0.65 52.0 4.41e-01 90.0% 70.8%
3234666 101.1.2.577 alpha arrays › HTH › HTH › winged helix domain › SPK 0.64 51.0 4.35e-01 88.6% 69.2%
4941477 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 44.0 3.97e-01 72.9% 68.0%
3243067 101.1.2.577 alpha arrays › HTH › HTH › winged helix domain › SPK 0.63 50.0 4.32e-01 90.0% 72.2%
1165372 101.1.2.9 alpha arrays › HTH › HTH › winged helix domain › DNA_topoisoIV 0.62 49.0 4.02e-01 88.6% 64.5%
4959879 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.62 46.0 3.28e-01 81.4% 39.1%
3220456 101.1.1.264 alpha arrays › HTH › HTH › Three-helical HTH › SPK 0.62 49.0 4.12e-01 90.0% 63.1%
3987909 138.1.1.9 alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA_pol3_delta_C 0.59 53.0 4.27e-01 100.0% 95.6%
3213714 101.1.2.577 alpha arrays › HTH › HTH › winged helix domain › SPK 0.59 47.0 3.82e-01 90.0% 58.6%
3311133 101.1.1.3 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.58 45.0 4.36e-01 98.6% 75.0%
3239312 101.1.1.264 alpha arrays › HTH › HTH › Three-helical HTH › SPK 0.56 44.0 3.91e-01 90.0% 73.4%
3590779 162.1.1.1 alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD 0.56 42.0 3.54e-01 81.4% 81.7%
3488459 101.1.1.4 alpha arrays › HTH › HTH › Three-helical HTH › PAX 0.54 42.0 4.06e-01 92.9% 75.0%
3586638 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 41.0 2.91e-01 94.3% 36.4%
3651790 109.4.1.1282 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, TPR_24 0.51 40.0 2.82e-01 88.6% 29.2%
3623781 109.4.1.1922 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FAT, mTOR_dom, HEAT_ATR 0.50 40.0 2.16e-01 95.7% 6.6%