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OR354850.1__WNM55328.1__CoNPh27_CDS0062__00062

Bact-Vir

OR354850.1__WNM55328.1__CoNPh27_CDS0062__00062

Identity

Accession:
OR354850 ↗
Kingdom:
phage

Quality

71.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Staphylococcus_phage_S-CoN_Ph27

TaxID: 3076584

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-53
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.75 47.0 3.27e-01 100.0% 20.2%
3djwA00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.75 53.0 4.32e-01 100.0% 41.1%
4jglA00 2.40.128.530 Mainly Beta › Beta Barrel › Lipocalin › 0.75 50.0 3.62e-01 100.0% 24.3%
2fggA01 3.30.160.240 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 0.74 45.0 3.92e-01 100.0% 42.7%
2yeqA02 3.60.21.70 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Alkaline phosphatase D (PhoD) 0.71 49.0 2.87e-01 100.0% 9.2%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 42.0 3.94e-01 100.0% 51.6%
8adlB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.68 47.0 2.88e-01 100.0% 11.9%
4oocA00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.65 41.0 2.60e-01 98.1% 12.3%
2hn1A01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.64 39.0 2.85e-01 92.3% 21.8%
2bbhA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.64 40.0 2.88e-01 92.3% 21.2%
2bolA03 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 44.0 3.71e-01 100.0% 41.9%
4bwgD00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 37.0 3.02e-01 100.0% 29.9%
2jq5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 41.0 3.15e-01 71.2% 29.7%
4ydzA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 42.0 3.13e-01 100.0% 28.9%
3kd4A03 2.60.120.1130 Mainly Beta › Sandwich › Jelly Rolls › 0.60 37.0 2.78e-01 100.0% 23.4%
6ap4B02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.59 39.0 2.84e-01 100.0% 24.8%
4egwA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.59 36.0 2.71e-01 92.3% 23.7%
1y6kR02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 50.0 4.09e-01 100.0% 64.1%
6em3x01 3.40.50.10480 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Brix domain 0.58 46.0 3.27e-01 94.2% 62.2%
3lqmA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 49.0 4.00e-01 98.1% 61.8%
3kspA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 45.0 3.39e-01 100.0% 34.9%
7c5wA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 39.0 2.86e-01 94.2% 27.0%
3n0aA02 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 50.0 3.63e-01 100.0% 54.8%
4pc3C02 3.30.479.20 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › Elongation factor Ts, dimerisation domain 0.55 49.0 4.14e-01 100.0% 93.0%
1s3rA02 3.30.1040.20 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.54 42.0 4.21e-01 100.0% 81.1%
4jgwA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.54 39.0 2.82e-01 100.0% 26.3%
3bcyA00 3.40.1000.40 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Respiratory growth induced protein 1 0.53 41.0 3.16e-01 94.2% 87.7%
1pcfA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.52 36.0 3.44e-01 100.0% 59.1%
2rhqB05 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.52 42.0 2.95e-01 100.0% 56.9%
1vavA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 39.0 2.69e-01 90.4% 27.9%
1fyhB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.56e-01 100.0% 57.7%
3mlqH00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.50 30.0 3.26e-01 84.6% 71.4%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4070525 2484.1.1.31 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Glucokinase 0.73 50.0 3.84e-01 100.0% 31.7%
4880355 11.1.1.11 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Usher 0.72 47.0 3.64e-01 100.0% 31.5%
5053926 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.71 41.0 3.58e-01 100.0% 37.5%
4022543 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.71 51.0 3.29e-01 100.0% 17.0%
3486075 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.70 47.0 4.03e-01 100.0% 45.0%
4259228 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.70 44.0 3.48e-01 100.0% 30.0%
3798258 109.21.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain 0.69 49.0 2.78e-01 100.0% 6.6%
5045102 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.68 44.0 3.66e-01 98.1% 36.8%
3704272 2004.1.1.175 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ParA 0.67 45.0 2.78e-01 100.0% 11.0%
3983642 220.1.1.73 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF3461 0.66 43.0 3.57e-01 100.0% 38.9%
4057923 192.14.1.2 ↗ alpha bundles › Long alpha-hairpin › Siah interacting protein N terminal domain-like › Siah interacting protein N terminal domain-like › DUF3461 0.66 43.0 3.32e-01 100.0% 31.0%
4299507 3256.1.1.2 ↗ a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain › eIF3g 0.66 41.0 4.76e-01 100.0% 94.3%
4817094 7502.1.1.2 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Brix 0.66 45.0 3.76e-01 100.0% 37.9%
3421076 5.1.3.142 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.65 44.0 2.77e-01 100.0% 12.5%
3475901 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.63 45.0 3.70e-01 100.0% 43.3%
3680932 220.1.1.180 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7642 0.62 42.0 3.24e-01 100.0% 32.2%
5001584 12.6.1.4 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro127M 0.62 41.0 3.54e-01 100.0% 41.2%
3413411 109.21.1.3 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Sec16_C 0.62 39.0 2.25e-01 100.0% 6.9%
3598138 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.61 41.0 3.00e-01 100.0% 27.7%
1559028 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.60 42.0 3.13e-01 100.0% 28.9%
3899230 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.60 42.0 3.39e-01 100.0% 39.0%
3627506 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.60 44.0 3.44e-01 100.0% 37.3%
4986251 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.58 43.0 3.54e-01 100.0% 45.6%
3589882 4325.1.1.7 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › Arm-DNA-bind_4 0.58 36.0 3.67e-01 98.1% 64.0%
4027383 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.57 36.0 2.14e-01 100.0% 8.7%
3495848 5.1.4.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.57 50.0 2.86e-01 100.0% 10.2%
4183697 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.56 43.0 3.07e-01 100.0% 28.4%
3236317 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 47.0 3.84e-01 100.0% 63.8%
None — 0.55 40.0 2.27e-01 84.6% 8.1%
3895069 5.1.8.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 › Kelch_KLHDC2_KLHL20_DRC7 0.53 43.0 3.14e-01 98.1% 37.7%
4928085 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.53 34.0 2.46e-01 100.0% 19.4%
3239567 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.53 46.0 3.69e-01 100.0% 81.0%
4028161 230.3.1.0 ↗ a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain 0.53 46.0 3.49e-01 98.1% 99.2%
4388603 230.3.1.1 ↗ a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS 0.53 46.0 3.80e-01 100.0% 95.8%
5027780 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.53 36.0 3.50e-01 100.0% 63.3%
418817 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.52 44.0 3.06e-01 100.0% 58.3%
3709820 3860.1.1.0 ↗ alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm 0.52 34.0 2.77e-01 98.1% 33.3%
4944821 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.51 38.0 3.63e-01 100.0% 68.3%
4418856 223.2.1.23 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › NPR3 0.50 43.0 2.99e-01 100.0% 61.6%
D2 medium residues 81-185
PDB
D3 medium residues 191-254
PDB
Domain cluster: representative
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4562063 3718.1.1.30 ↗ alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › PhaC_N 0.79 54.0 4.22e-01 70.3% 47.2%
3789283 2004.1.1.428 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom, Helicase_C, HDA2-3 0.70 57.0 3.25e-01 87.5% 86.9%
D4 medium residues 255-316
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2be4A03 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.76 58.0 5.13e-01 82.3% 70.5%
3cnhB02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.72 51.0 5.00e-01 75.8% 72.1%
3d6jA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.66 49.0 4.81e-01 95.2% 73.1%
3f2eA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 45.0 4.11e-01 75.8% 74.7%
2qgnA02 1.10.287.890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 0.58 42.0 3.88e-01 87.1% 59.8%
5c8aA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.54 40.0 3.74e-01 80.6% 71.8%
2v3sA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 35.0 3.10e-01 71.0% 45.8%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3831406 509.1.1.12 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PF25972 0.65 48.0 4.59e-01 75.8% 70.0%
3947884 101.1.1.393 ↗ alpha arrays › HTH › HTH › Three-helical HTH › KfrA_N 0.62 45.0 4.79e-01 83.9% 89.1%
3671293 509.1.1.12 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PF25972 0.61 46.0 4.45e-01 79.0% 70.0%
3691750 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.56 40.0 3.10e-01 77.4% 94.6%
3543275 101.1.1.287 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PF28388 0.51 39.0 4.18e-01 83.9% 96.4%