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OR354850.1__WNM55352.1__CoNPh27_CDS0086__00086

Bact-Vir

OR354850.1__WNM55352.1__CoNPh27_CDS0086__00086

Identity

Accession:
OR354850 ↗
Kingdom:
phage

Quality

87.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Staphylococcus_phage_S-CoN_Ph27

TaxID: 3076584

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 29-102
PDB
Domain cluster: rep: OP142323.1__UVD33254.1__X__00017__D443-515
D2 high residues 138-270
PDB
Domain cluster: rep: rifoxyc1_full_scaffold_3_prodigal-single.1__X__X__00157__D2-120
D3 medium residues 107-124_324-346
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1f0xA04 3.30.1370.20 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › D-lactate dehydrogenase, cap domain, subdomain 2 0.61 49.0 3.98e-01 95.1% 48.2%
1pu1A00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.59 44.0 3.65e-01 92.7% 49.5%
2q3fA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 43.0 2.88e-01 80.5% 40.2%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.57 45.0 3.70e-01 100.0% 55.9%
6le1A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 44.0 3.88e-01 92.7% 67.6%
2fyuI00 2.10.210.10 Mainly Beta › Ribbon › Cytochrome Bc1 Complex; Chain I › Cytochrome Bc1 Complex; Chain I 0.55 39.0 3.55e-01 75.6% 57.9%
3ihlB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 36.0 2.31e-01 92.7% 12.7%
4go6A00 6.10.250.2590 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.53 37.0 3.74e-01 90.2% 80.5%
4jklA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 40.0 2.76e-01 87.8% 21.2%
4lsdF00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 40.0 3.20e-01 90.2% 71.4%
4jn3A01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.52 39.0 2.69e-01 100.0% 55.2%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3424575 220.1.1.153 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TRF2_HOY1 0.66 46.0 3.56e-01 78.0% 31.0%
3990559 11.1.1.957 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3_Dep-1_6th 0.61 47.0 3.24e-01 87.8% 24.0%
5052421 305.1.1.2 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 0.60 49.0 3.88e-01 97.6% 43.2%
4994799 304.16.1.1 ↗ a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE 0.60 47.0 3.94e-01 95.1% 58.7%
3622878 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.59 39.0 3.33e-01 70.7% 40.0%
3657148 305.1.1.2 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 0.59 48.0 4.20e-01 100.0% 64.3%
4936431 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.58 47.0 4.03e-01 97.6% 58.7%
3903626 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.57 43.0 2.82e-01 90.2% 17.1%
3480583 305.1.1.0 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.57 46.0 4.21e-01 100.0% 76.7%
3582491 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.56 46.0 3.22e-01 97.6% 61.3%
4567918 273.1.1.0 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like 0.55 38.0 2.83e-01 75.6% 26.4%
3994311 389.1.3.0 ↗ few secondary structure elements › EGF-like › EGF-related › TNF receptor-like 0.54 38.0 3.88e-01 78.0% 82.5%
2475231 519.1.1.1 ↗ a+b two layers › mRNA decapping enzyme DcpS N-terminal domain › mRNA decapping enzyme DcpS N-terminal domain › mRNA decapping enzyme DcpS N-terminal domain › DcpS 0.53 37.0 2.73e-01 75.6% 33.1%
5022463 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.53 42.0 3.72e-01 95.1% 60.0%
4867166 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.52 36.0 3.68e-01 97.6% 89.5%
3989850 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 38.0 2.98e-01 87.8% 86.0%
3941026 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.50 35.0 2.52e-01 90.2% 76.9%
D4 medium residues 128-136_274-318
PDB
Domain cluster: rep: OP142323.1__UVD33254.1__X__00017__D544-552_692-734