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OR354857.1__WNM55549.1__CoNPh34_CDS0018__00017

Bact-Vir

OR354857.1__WNM55549.1__CoNPh34_CDS0018__00017

Identity

Accession:
OR354857 ↗
Kingdom:
phage

Quality

72.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rountreeviridae› Staphylococcus_phage_S-CoN_Ph34

TaxID: 3076592

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-57
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lt8A01 3.30.30.10 Alpha Beta › 2-Layer Sandwich › Defensin A-like › Knottin, scorpion toxin-like 0.57 25.0 2.99e-01 85.5% 58.3%
6rwcA02 2.20.25.590 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.55 30.0 3.46e-01 96.4% 74.4%
4akgA08 1.10.472.130 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Dynein motor, AAA2 domain, small subdomain 0.52 42.0 3.22e-01 100.0% 75.0%
1y0kA00 3.40.1540.10 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical protein pa4535 › Protein of unknown function DUF1780, putative endonuclease 0.51 37.0 2.73e-01 83.6% 67.0%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3426670 207.1.1.2 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRRNT_2 0.50 39.0 2.38e-01 90.9% 16.0%
D2 high residues 62-171
PDB
Domain cluster: rep: NC_048740.1__YP_009842188.1__HWB96_gp13__00013__D309-427_623-641
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.60 23.0 3.20e-01 72.7% 70.8%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 27.0 2.94e-01 100.0% 53.5%
1c8uA02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 38.0 3.83e-01 100.0% 78.3%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2989726 3367.1.1.1 ↗ beta complex topology › C-terminal domain in bacteriophage C1 tail knob protein, gp12 › C-terminal domain in bacteriophage C1 tail knob protein, gp12 › C-terminal domain in bacteriophage C1 tail knob protein, gp12 › phi29_gp9_C 0.93 88.0 5.55e-01 100.0% 22.9%
1118267 3367.1.1.1 ↗ beta complex topology › C-terminal domain in bacteriophage C1 tail knob protein, gp12 › C-terminal domain in bacteriophage C1 tail knob protein, gp12 › C-terminal domain in bacteriophage C1 tail knob protein, gp12 › phi29_gp9_C 0.88 73.0 5.26e-01 100.0% 34.5%
1117749 3367.1.1.1 ↗ beta complex topology › C-terminal domain in bacteriophage C1 tail knob protein, gp12 › C-terminal domain in bacteriophage C1 tail knob protein, gp12 › C-terminal domain in bacteriophage C1 tail knob protein, gp12 › phi29_gp9_C 0.88 73.0 4.82e-01 100.0% 24.7%
1842912 3367.1.1.1 ↗ beta complex topology › C-terminal domain in bacteriophage C1 tail knob protein, gp12 › C-terminal domain in bacteriophage C1 tail knob protein, gp12 › C-terminal domain in bacteriophage C1 tail knob protein, gp12 › phi29_gp9_C 0.79 63.0 4.46e-01 100.0% 28.8%
4452923 11.1.6.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain › UPA_SH3BP4 0.51 40.0 3.57e-01 82.7% 95.5%
3740784 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 28.0 3.15e-01 100.0% 67.1%
D3 high residues 183-257
PDB