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OR354858.1__WNM55631.1__CoNPh35_CDS0062__00061

Bact-Vir

OR354858.1__WNM55631.1__CoNPh35_CDS0062__00061

Identity

Accession:
OR354858 ↗
Kingdom:
phage

Quality

88.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rountreeviridae› Andhravirus› Staphylococcus_phage_S-CoN_Ph35

TaxID: 3076593

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-47
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3dc7A00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.70 57.0 3.64e-01 93.0% 18.8%
3bzwF00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.69 55.0 3.43e-01 95.3% 16.0%
1npdB02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.67 48.0 3.35e-01 97.7% 22.8%
1pfkA02 3.40.50.460 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphofructokinase domain 0.64 46.0 3.31e-01 79.1% 66.7%
5rl9B01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 52.0 3.56e-01 100.0% 26.2%
3geeA03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 51.0 3.70e-01 100.0% 36.1%
2i6jA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.60 49.0 3.44e-01 100.0% 28.6%
4j4hA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 47.0 3.45e-01 100.0% 31.5%
3fbtA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 43.0 3.18e-01 100.0% 28.8%
5uaiA01 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.58 42.0 2.74e-01 100.0% 17.0%
4d8tA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 45.0 3.53e-01 95.3% 70.6%
2o7iA03 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.57 48.0 3.01e-01 100.0% 23.6%
3c5cB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 47.0 3.25e-01 100.0% 28.7%
6u8yJ01 3.40.50.12280 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 42.0 2.97e-01 93.0% 23.1%
2wt8A00 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.55 43.0 3.43e-01 97.7% 41.2%
4uuwA01 3.40.980.10 Alpha Beta › 3-Layer(aba) Sandwich › Molybdenum Cofactor Biosythetic Enzyme; Chain A › MoaB/Mog-like domain 0.54 40.0 2.77e-01 86.0% 38.4%
2w2kA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 41.0 2.79e-01 100.0% 20.4%
3k32B00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.54 41.0 2.83e-01 100.0% 20.9%
4ze8A03 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.53 42.0 2.84e-01 100.0% 22.4%
4lxqB00 3.40.50.12230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 37.0 2.46e-01 100.0% 15.0%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4030888 2007.5.1.8 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.79 68.0 4.22e-01 100.0% 18.1%
3335053 2007.1.14.16 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Palm_thioest 0.67 56.0 4.18e-01 97.7% 37.4%
3423646 3008.1.1.0 ↗ a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.62 49.0 3.86e-01 93.0% 58.0%
3361769 3617.1.1.0 ↗ a+b three layers › Thioredoxin-like domain in RNase E › Thioredoxin-like domain in RNase E › Thioredoxin-like domain in RNase E 0.62 49.0 3.85e-01 93.0% 58.0%
5059594 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.62 50.0 3.85e-01 100.0% 43.5%
5074415 2004.1.3.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.60 43.0 3.00e-01 100.0% 20.0%
3067438 2488.1.1.3 ↗ a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › tRNA_m1G_MT 0.58 44.0 2.81e-01 88.4% 23.8%
5010565 7581.1.1.1 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N 0.58 46.0 3.04e-01 100.0% 23.0%
4092909 2003.1.8.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › MurCD/PglD N-terminal domain-like 0.57 43.0 3.70e-01 100.0% 47.1%
4845152 12.1.1.38 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF5597 0.57 46.0 2.75e-01 100.0% 14.6%
4881151 7581.1.1.2 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › ketoacyl-synt 0.57 45.0 2.98e-01 100.0% 29.0%
3686474 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.55 41.0 3.00e-01 100.0% 26.2%
3661641 7568.1.1.1 ↗ a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.53 44.0 3.39e-01 97.7% 41.0%